Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0040 ATGGCGCACACAACGCAAATTGCCGTTCTTGCATCGCTACTTCAACAGGCATCGGAGAGCATCCTTGAAATGCTTCAAACGGCAAGAAAGAGCAATCGGAACAGAGGAGTTCTAAGGTCGGTAATCCTCACAGAGTTGACTCCTCTGTTCAACGAGATCAAGCAATACAATTACGACGACGAACACCTTGATCGACAAAGAGAGCAAATCACGGCTCTTATAACAGAAAATGATGATGACGGTGTAAGCCTATGCAATTGCAATTGCTCTTCTTGGTCGCGCTTGTGGGAAAATTGCTTCTCCTGGCTCGTTCGGCATATAAAGAATAATAATAATAATAATAATAATAACAATGATGATGATTGTGATTACTTTGATGAAGCTTTGAGGGAGGATTTGAATGAGACGCTTGAGAAGTTGAGAGAGATTATTGAGGTGCTTAAATGTGGCTGTGTTTCGGAAAGGAGGGGGGTATGTGGTGTTCCAGAGAAGCGAGGGTTCACGGTGGGATTGGAGGAGTCAATGAGGAAGTTGAAGGCGGAGGTTATGAGGGAGAGGGATGGCGTGTCAGTCATTGTTTTGACCGGCTTGGCTGGTTCTGGGAAGACCACTTTGGCTACATCGCTCTGTTGGGATCAACAAGTCAAAGGTAAATTCAGGGAAAATATCTTATTCATCACATGCTCGAAAACATTCAAGATAAAGATAATTGTAGAGAGACTCTTTGAACACTGTGGATATCGAGTGCCAGAGTTTCAAAACGAAGAAGATGCAATTAACCGAATGGGAGTTTTGCTGAGGCATATTGGAAAAAGTAGTCCAATGTTGTTGGTCCTTGATGATGTTTGGCCTGGTTCAGAATCCCTTGTTGAGAAATTCAAAATACAAACATCATCAGATTACAAGATTCTGGTTACTTCAAGGGTTGCATATCCTAGATTTGGCACCCCATGTATCGTCTTAGAACCACTCAATCATGAAGATGCATTAACACTTTTCAGTCACTTTGCCCAATTGGAAGATAACTACTTCTCAAATTTCCAAAATGATGAAGATATTCTCCAAAAGGTTGTAAGAGGTTGCAAGGGTTCACCTCTTGCGATTACTGTGATTGGTAGATCAATAAGAAATCAACCTTATGAATTTTGGCTCAAGATGGTAGAGAAATTGTCACAGGGTCGTTTTATATTTGATTCAAGTGAGGAATTACTAAAATGCCTCGAAAATATTTTGGAAATTTTAGAGGATAAGCCTATCATAAAGGAGTGCTTCATGGACCTAGGGCTATTTCCGGAAGATCAAAGAATCCCTGTTACTGTTCTCTTGGATATATGGACTGAGTTGTATGGAATGGATGATGATGGCATAGAGGCAATGACTATTATCAACACATTAAACTCTATGAATTTGGCTAATGTCTTAGTTGCAAGGAAAAATGCTTGTGACGTTGAAAACTATTACTACAACAACCACTTCATCGTGGTGCATGATCTTCTAAGAGAACTTGCAATTTATGAGAACAATCAAGAAGCAACAGAACATAGACACAGAATGAGCATTGGCATGAACGAACAGAATGGCGAATTTGGGCTTGGGGAGAAGCAGCGAGGCATCATTGCTGAAATCTTTTCAAAATGTTTGAGATGGTGTATTAATAAACAGATGCCGCAACAGATCCATGCACGCACTTTGTCAATAACAATTGATGAAACTTGCCCTTCTTATTGGTCCAATATGCAAACGGCTGACGTTGAAGTTCTGATTTTCCATCTTCGAGCTAAGTTCTTCTCTTTTCCAATGTTCATGCAGAAAATGAGTAAACTCAAAGTTCTCATAGTAACAAATTATGGCTTCTATCCTTCTGAGCTCAACAATTTCAAGCTACTTGATTCCTTACCAAGCCTGAAAAGAATAAGACTAGAGAGAATTTCTGTTCCTTCCTTCGGCCAGTTAAAGAATCTAAGGAAACTATCCCTCTACATGTGTCAAACAAGTCATGCTTTCGAATTTGATAACTTCAAATTTTCAGAAGCATGTCCAAATCTAGTAGAGTTGAACATTGATTACAGCAAAGATATGGTTGAATTGCCTAATGGAATCTGCGAAATTCCGTCGCTGAAGAAGCTCTGCGTCACTAATTGCCACAAGCTCTGTTCATTGCCGAAAGAAATTGGAAATCTGAAGAACTTGGAAATCTTGAGGCTCAATTCTTGCACTGATTTGCAAGGATTACCAGAATCCATTGGAATGCTTTCGAATCTGCGACTTCTGGACATATCAAACTGCATAAGCCTTCCAAATTTACCTGAAGAAATTAGTAATCTGTGTGGTCTAAGGAAGCTGTACATGACGAGTTGCGCGAACTGCGAATTGCCGTCTTTAATCTCCAATCTTGAGAATTTGAAGGTGACATGTGACGAAGAAACAGCTACTTTATGGGAAGCTTTCATAACAATGATTCCTAATCTAAGGATAGAGGTGCCTCAAGTTGATGTGAACTTAAATTGGCTTCACACAGTTAATTAG 2526 0.3987 MAHTTQIAVLASLLQQASESILEMLQTARKSNRNRGVLRSVILTELTPLFNEIKQYNYDDEHLDRQREQITALITENDDDGVSLCNCNCSSWSRLWENCFSWLVRHIKNNNNNNNNNNDDDCDYFDEALREDLNETLEKLREIIEVLKCGCVSERRGVCGVPEKRGFTVGLEESMRKLKAEVMRERDGVSVIVLTGLAGSGKTTLATSLCWDQQVKGKFRENILFITCSKTFKIKIIVERLFEHCGYRVPEFQNEEDAINRMGVLLRHIGKSSPMLLVLDDVWPGSESLVEKFKIQTSSDYKILVTSRVAYPRFGTPCIVLEPLNHEDALTLFSHFAQLEDNYFSNFQNDEDILQKVVRGCKGSPLAITVIGRSIRNQPYEFWLKMVEKLSQGRFIFDSSEELLKCLENILEILEDKPIIKECFMDLGLFPEDQRIPVTVLLDIWTELYGMDDDGIEAMTIINTLNSMNLANVLVARKNACDVENYYYNNHFIVVHDLLRELAIYENNQEATEHRHRMSIGMNEQNGEFGLGEKQRGIIAEIFSKCLRWCINKQMPQQIHARTLSITIDETCPSYWSNMQTADVEVLIFHLRAKFFSFPMFMQKMSKLKVLIVTNYGFYPSELNNFKLLDSLPSLKRIRLERISVPSFGQLKNLRKLSLYMCQTSHAFEFDNFKFSEACPNLVELNIDYSKDMVELPNGICEIPSLKKLCVTNCHKLCSLPKEIGNLKNLEILRLNSCTDLQGLPESIGMLSNLRLLDISNCISLPNLPEEISNLCGLRKLYMTSCANCELPSLISNLENLKVTCDEETATLWEAFITMIPNLRIEVPQVDVNLNWLHTVN* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0040 841 SUPERFAMILY RNI-like 597 802 - -
Amo01g0040 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 427 IPR027417 -
Amo01g0040 841 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 8 828 IPR039203 GO:0050832
Amo01g0040 841 Coils Coil 130 150 - -
Amo01g0040 841 Gene3D Ribonuclease Inhibitor 551 812 IPR032675 -
Amo01g0040 841 PRINTS Disease resistance protein signature 749 765 - -
Amo01g0040 841 PRINTS Disease resistance protein signature 269 283 - -
Amo01g0040 841 PRINTS Disease resistance protein signature 191 206 - -
Amo01g0040 841 PRINTS Disease resistance protein signature 361 375 - -
Amo01g0040 841 Gene3D - 323 406 IPR042197 -
Amo01g0040 841 Gene3D - 407 505 IPR036388 -
Amo01g0040 841 Coils Coil 397 417 - -
Amo01g0040 841 Pfam NB-ARC domain 172 401 IPR002182 GO:0043531
Amo01g0040 841 CDD AAA 169 282 - -
Amo01g0040 841 Gene3D - 151 311 IPR027417 -
Amo01g0040 841 Coils Coil 495 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0040 Amo-Chr1 998190 1007902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0040 597 778 Receptor kinase-like Gene Family AT5G56040 28.017 1.73e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0040 - - gmx:100809435 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0040 01 998190 1007902 Amo11g0697 11 14014757 14027126 hybridization