Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0035 ATGTCATCGACGAGTACACCATGCGCGGTATGCAAGTACCGTAGTCGGAAGTGCACACCGGAGTGCATTTTTGCACCGTACTTCCCAGCGAACAACCCAGAGCGCTTTGAATGCGTCCGCCGCCTCTACAGCGCCAGCAAAGTTGGCAAGTTCCTCGTCGAGCGACCTCCATCCCAGCGCGAGGATATGGTGAAGGCCCTTGCGTTCGAGTGGAAGGCACGCTACCACAACCCGGTCTATGGTTGCACCCTCGAAATCATGATCCTCAAGCACCTCATCGACCAGAACAGTGCCCTCCTCGAAAAAATCAAGATAGAACTTAACGCCTACAGGAACCCACAAGCCATTCAAGGTCCATTCAACCCTCCTCAGGAAATGCCTCCCGCCCAAGAACTTGAGTTGTTGCAACAACCACCACAGCAGCAGGCACTACAACAACTGCAACTTCAGCCGGACCCAGGGGAGCAAGAGTTGTTGCAGCCCCATGAACGTGAGTTATTGCAAGCTATGATGGAATCGGACCCAGGGGAGCAAGAGTTGTTGCAGCCCCATGAAGTTGAGTTCTTGCATGCCCAAGAACTTGAGTTGTTGAAAGCTATAATGGAACCTGTTGTAAGWTATGATGGCCTCATGCAGCAAATGCAAGTATTGCTTCAACAACAAAAACATCAAATAGAACAACTATAA 687 0.508 MSSTSTPCAVCKYRSRKCTPECIFAPYFPANNPERFECVRRLYSASKVGKFLVERPPSQREDMVKALAFEWKARYHNPVYGCTLEIMILKHLIDQNSALLEKIKIELNAYRNPQAIQGPFNPPQEMPPAQELELLQQPPQQQALQQLQLQPDPGEQELLQPHERELLQAMMESDPGEQELLQPHEVEFLHAQELELLKAIMEPVVXYDGLMQQMQVLLQQQKHQIEQL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0035 228 Pfam Lateral organ boundaries (LOB) domain 7 101 IPR004883 -
Amo01g0035 228 Coils Coil 211 228 - -
Amo01g0035 228 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Amo01g0035 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 195 - -
Amo01g0035 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0035 Amo-Chr1 930373 931059 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0035 1 170 AS2 family AT5G66870 40.588 1.92e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo01g0035 LOB 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0035 - - ahf:112710769 175.637