Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0032 ATGTCCAGAAATGAGGATGATGTCAAGAATGATTATGATAATAATTTGGGTGATGATTTCGATTATCAACCGAATGCAGAAGATGATGCTGAAGACGACGATGTGGATTTGCTGGATTCTACTAGAAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCGAATTTAATGGTGGATGATATTTGGAACCTGGAGTTTAGGACAGAGAATGAGGCTTGCCAATTTTATAACGTTTATTCTTGTTGGCATGGATTTGTAATAAGGAAGGAAGACATGGTTAGGGATAATGAAGGTAGAATCATTAGCAGGCAATTTGTTTGCAATAAGGAGGGCTGGAGGAATATGAGGTATCTTGATCTAGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTGGGTTTTTCGGTTACATAAGGACGACGTCACAGTGCGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACTTGGATAGGGCCTTAAAGGAGTATAGAAACAATGAATTAATAACTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACTCGAAACATTTTTAAGGAAATTCGTAATGAGATTCAGAGGGCAAGGGCTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTACTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTTGATAGAAGTAAGAATATGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATTTTCTGTGCCATGAAGTTCGAAAACATAATTGAGTTTCTAGATTCGTTGATCTACAAAAAGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACGTCGAAAGGGTCTTAAAGTTTTGA 1002 0.3952 MSRNEDDVKNDYDNNLGDDFDYQPNAEDDAEDDDVDLLDSTRKSEEVCGVKRIANLMVDDIWNLEFRTENEACQFYNVYSCWHGFVIRKEDMVRDNEGRIISRQFVCNKEGWRNMRYLDLDDRSREARSLTRTKCPARLGFFGYIRTTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELITDFKSQCSEPVMITSLEVYERSASCYFTRNIFKEIRNEIQRARALNIKVLSTTLDKVEFSVTTLGDPAKDRRVEVDRSKNMFSCSCKLFESRGIPCSHIFCAMKFENIIEFLDSLIYKKWTKNAKNEFISTEMPVNDDVERVLKF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0032 333 Pfam SWIM zinc finger 271 287 IPR007527 GO:0008270
Amo01g0032 333 Pfam FAR1 DNA-binding domain 74 139 IPR004330 -
Amo01g0032 333 PANTHER OS03G0181600 PROTEIN 141 314 - -
Amo01g0032 333 SMART 26again6 270 297 IPR006564 GO:0008270
Amo01g0032 333 PANTHER OS03G0181600 PROTEIN 54 139 - -
Amo01g0032 333 MobiDBLite consensus disorder prediction 1 36 - -
Amo01g0032 333 ProSiteProfiles Zinc finger SWIM-type profile. 259 295 IPR007527 GO:0008270
Amo01g0032 333 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 141 314 IPR031052 GO:0006355
Amo01g0032 333 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 54 139 IPR031052 GO:0006355
Amo01g0032 333 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0032 Amo-Chr1 889095 890996 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo01g0032 FAR1 1.6e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0032 - - ahf:112710798 391.349