Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0027 ATGAAAAAGACTAGAGTGTACAACGGGATTGAATTCGTATTGTTGCAATTCCAACCACCCTCTCCAAGTAACGCTTTCAGTCTCAGACTCTCCGTGTTCGCTGCCGCACCCGCCAACCTTCCCCCGGCCTCGCCTCCACCTTGCCGTCGTCGCCTCCTCCGACCACTTCGAGGTGCTAAGCTTTTAATTATAAAAAAAAACAATAATAGTAACAGAATCGAATTGAATTGTACGCAGAAAAGAATGTCATCGACGAGTACACCATGCGCGGTATGCAAGTACCGTCGTCGGAAGTGCACACCGGAGTGCATTTTTGCACCGTACTTCCCAGCGAACAACCCAGAGCGCTTTGCATACGTCCGCCGCCTCTACAGCGCCAGCAAAGTCGGCAAGTTCCTCGACGAGCGACCTCCACCCCAGCGCGAGGATATGGTGAAGGCCCTTGCGTTCGAGGCGGAGGCACGCCACCACAACCCGGTATAG 483 0.5342 MKKTRVYNGIEFVLLQFQPPSPSNAFSLRLSVFAAAPANLPPASPPPCRRRLLRPLRGAKLLIIKKNNNSNRIELNCTQKRMSSTSTPCAVCKYRRRKCTPECIFAPYFPANNPERFAYVRRLYSASKVGKFLDERPPPQREDMVKALAFEAEARHHNPV* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0027 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 82 160 - -
Amo01g0027 160 ProSiteProfiles LOB domain profile. 87 160 IPR004883 -
Amo01g0027 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 82 160 - -
Amo01g0027 160 Pfam Lateral organ boundaries (LOB) domain 88 160 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0027 Amo-Chr1 847436 848050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0027 83 160 AS2 family AT1G65620 56.410 1.74e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo01g0027 LOB 7.3e-26 No_clan