Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0026 ATGTCATCGACGCCTACACCATGCGCGGCATGCAAGTTCCTTCGTCGGGAGTGCACACCGGAGTGCATTTTCGCACCGTACTTCCCAGCGAACAACCCAGAGCGCTTCGAATGCGTCCACCGCGTCTTCGGCGCCAGCAACGTCGGCAATATCCTCAACGCGCTACCTCCATCCCAGCGCGAGGATGCGGCGAAGTCCTTTGCGTTCCAGGCGGAGGCAAGCCTCCGCAGCCCGGTCTATGGCTGCACCCTCCAAGTCCCCAAGAGAGAACCTAGTGCCTCCATGAACCCACAAGCCATTCAAGGTCCATTCAACCCTCAGGAAAAGCCTCTGTCTTCACCTCCCGCCCATTTAGGCCCTCCCTGCGGCCCAAATGTTGTACAGTATTCAGCTCATTTAGGCCCATTTAAGCAAGAGATGTTGCAAGCTCAAGAACTTGACTTGTTGCAGGCCCAAGAACTTGCTGCTGCTAAGCAAGTTAAGATGGAAGTTAAGATGGAACCTGTTGCTGGGATTGAACCTGCTGCGGCTGCGGCGCCCTACGGCGGTGACATCCGTAGAAGTGAAGTGTTTGGCCTCATGCGGCAAATTCAAGTATTGTTTCAACAACAAAAACATCAAATACGACAACTATTTACAACAACATCGACGAGAACTACAAGTATTACAACATCGAATAGAACTACGAGTATTACAACAAAACAACACACAACAGCACCAGCAGCAACCACACAACAACAGAGAGTGAAGACAGTAAAGAGTTTGCTGCATACCAACTTCTTCGTATGGACTGACTTGGGTTTCATACCAAAAATATTTGGTGATGGATCAAAGAAATTTAATACTCTTTTAATGGAGATATTGGTGTCAACAATTATAGCAGTTGCAATGCCATTTTTTAGTTTCAATGAGATTATATCAACAATGAATTTCTTGTATAGTTTGGGGATGCTGTTGGAATTTGCATCGTTTCTTTGGCTTAGGAGAAAATTTCCATCATTGAAGAGGCCTTTTGAA 1017 0.471 MSSTPTPCAACKFLRRECTPECIFAPYFPANNPERFECVHRVFGASNVGNILNALPPSQREDAAKSFAFQAEASLRSPVYGCTLQVPKREPSASMNPQAIQGPFNPQEKPLSSPPAHLGPPCGPNVVQYSAHLGPFKQEMLQAQELDLLQAQELAAAKQVKMEVKMEPVAGIEPAAAAAPYGGDIRRSEVFGLMRQIQVLFQQQKHQIRQLFTTTSTRTTSITTSNRTTSITTKQHTTAPAATTQQQRVKTVKSLLHTNFFVWTDLGFIPKIFGDGSKKFNTLLMEILVSTIIAVAMPFFSFNEIISTMNFLYSLGMLLEFASFLWLRRKFPSLKRPFE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0026 339 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Amo01g0026 339 MobiDBLite consensus disorder prediction 223 244 - -
Amo01g0026 339 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 247 - -
Amo01g0026 339 MobiDBLite consensus disorder prediction 89 107 - -
Amo01g0026 339 Pfam Lateral organ boundaries (LOB) domain 7 86 IPR004883 -
Amo01g0026 339 MobiDBLite consensus disorder prediction 89 116 - -
Amo01g0026 339 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 4 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0026 Amo-Chr1 836788 839407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0026 2 83 AS2 family AT1G65620 65.854 4.34e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo01g0026 LOB 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0026 - - ahf:112710769 246.128