Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0022 ATGCCTCTCCCGTTGCCGTTGCCACAGCGTGATGCAGAATCTCGCCAACCGTCACCTGTGAGAACCTCCAGCGGCGCTAGCTCCAATGGCTATCGATCCGCGGAGGATCGGGATCAAACTGATGCTGCGGCAGCTGTCAACGGTTCATCCTTCACGGGCTTCAAGATGAGGAGTGTTTTTGCTAGCAACMGAGACACAAGGCGGAAGGCTGATCAGGTAGAAAATCGCTTGTCACCGAGATCTCAAGAAAACTATTGCTTAAGCCACTCCGGCAGGAGTGGTTCGAGTAGTCCCTTTGCAAGTCCCAAGATCAGTCCRTGTAGCACAGATGATTTCGTGCCATATCATTATGTGGCTCCAAAAGGAAACCAATTCTGGTCTGCACCKGAGATAACTAATTCAGAATCATCCATTCATCCAATCTTTGATTTATCGGCGTCTGGCACCGAAACCTCGCCAAAGGGAAGACCTCAGCTACTCCATGTTAAGAGCTCAAGTGGACCTCCATCACCCTTGCACGGCGGCATGATGAATGAGACTGCATCAGCGCGCCGGGCTGAAGGTAATTCTGTCAGTGTCCACCGTTTACCCCTGCCTCCCATGCCCAACTCACCTACCCTAACCGCTGCAACTACCTACTCCCACGCCWCGGGGAGATCAGAATCTTTGCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGTCGTGGCACGTTTGGAAGTGTTTATGTTGGCACTAATAGAGAAACTGGAGCATTGTGTGCTGTGAAAGAAGTAGAATTATGTCACGAGGATCCAACTTCCATAGAGTCTATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCCAACTGAAACATTCAAATATTGTGCAGTACTATGGTAGTGAAGTAGTTGAAGACAAATTCAATATTTATCTGGAATATGTACATCCTGGTTCAATTAATAAATATGTCCGCGACCATTGTGGYGCCATAACAGAATCGGTCGTTAGGAATTTTACTCGCCATATTCTTTCRGGGTTGGCATACTTGCATAGCAAGAAAACAATTCATAGGGACATTAAAGGGGCTAATTTGCTTGTCGATTCGGCAGGAGTTGTCAAACTTGCTGATTTTGGAATGKCAAAGCATCTTAATGGATATGAAGGTAATCTCTCTTTGAAGGGAAGTCCATATTGGATGGCTCCAGAGCTTATGCAGACTGTTGTTATGCATAAGGATAACAACTCGGATCTAGCTTATGCTACTGATATTTGGAGCCTCGGTTGTACAATCATTGAAATGTTCAATGGGAAGCCTCCATGGAGCGAGTTCGAAGGAGCTGCAGCAATGTTTAAGGTTATGAAAGATACCCCGCCTATACCGGAAACATTGTCAKCCGAMGGCAAAGATTTCTTGAGGTGCTGCTTTAGAAGAAATCCGGCAGAGCGACCTACTGCTGCAATGTTACTCGAACATCGATTTTTGAAGAACTCTCAACCGATGGATGTTACACCTTCCACTCAATTGTACAATGGAACAACAATCATGGATAAAACTCTAGGCCCTCATAGTCCCACAGGGCATCTAGAAAATATACCTGATCAGATATCTATCSCGTGCGAGAAGATTGCGAAGTTGAAAGCTGCAGAGCGGCGAGGAATTCTTATTCCTARCTTGGATATCTTGCCAGCATTCCAAAGACAATAA 1695 0.4531 MPLPLPLPQRDAESRQPSPVRTSSGASSNGYRSAEDRDQTDAAAAVNGSSFTGFKMRSVFASNRDTRRKADQVENRLSPRSQENYCLSHSGRSGSSSPFASPKISPCSTDDFVPYHYVAPKGNQFWSAPEITNSESSIHPIFDLSASGTETSPKGRPQLLHVKSSSGPPSPLHGGMMNETASARRAEGNSVSVHRLPLPPMPNSPTLTAATTYSHAXGRSESLPMKSQWKKGKLIGRGTFGSVYVGTNRETGALCAVKEVELCHEDPTSIESIKQLEQEIKVLSQLKHSNIVQYYGSEVVEDKFNIYLEYVHPGSINKYVRDHCGAITESVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMXKHLNGYEGNLSLKGSPYWMAPELMQTVVMHKDNNSDLAYATDIWSLGCTIIEMFNGKPPWSEFEGAAAMFKVMKDTPPIPETLSXXGKDFLRCCFRRNPAERPTAAMLLEHRFLKNSQPMDVTPSTQLYNGTTIMDKTLGPHSPTGHLENIPDQISIXCEKIAKLKAAERRGILIPXLDILPAFQRQ* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0022 564 ProSiteProfiles Protein kinase domain profile. 229 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0022 564 SMART serkin_6 229 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0022 564 MobiDBLite consensus disorder prediction 62 103 - -
Amo01g0022 564 MobiDBLite consensus disorder prediction 15 33 - -
Amo01g0022 564 MobiDBLite consensus disorder prediction 62 76 - -
Amo01g0022 564 MobiDBLite consensus disorder prediction 1 48 - -
Amo01g0022 564 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 2 534 - -
Amo01g0022 564 SUPERFAMILY Protein kinase-like (PK-like) 221 513 IPR011009 -
Amo01g0022 564 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 2 534 - -
Amo01g0022 564 ProSitePatterns Protein kinases ATP-binding region signature. 235 258 IPR017441 GO:0005524
Amo01g0022 564 MobiDBLite consensus disorder prediction 144 180 - -
Amo01g0022 564 Gene3D Transferase(Phosphotransferase) domain 1 225 515 - -
Amo01g0022 564 MobiDBLite consensus disorder prediction 77 103 - -
Amo01g0022 564 Pfam Protein kinase domain 230 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0022 Amo-Chr1 781238 785960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0022 32 529 MAP Kinase Kinase Kinase AT5G66850 56.473 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo01g0022 Pkinase 2.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0022 - - gmx:100790701 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0022 01 781238 785960 Amo11g0713 11 14334333 14341730 hybridization
Amo05g1017 05 13329598 13332805 Amo01g0022 01 781238 785960 PCT
Amo01g0022 01 781238 785960 Amo05g1017 05 13329598 13332805 PCT