Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0018 ATGGGTCTCTGCGTTTCAAAGGCTCCTTCCGAGTCTCTCTCTCCTTCTCACAACAACAATTCCAAACAAGAACCAGAACCAGCATCCGTCAATGGTGGCAAGAAGTCCCCGTTCTTCCCGTTCTACAGCCCTAGCCCAGCTCACTACCTCTTCTCCAAGAAGTCTCCGGCGAGATCTCCGGCCCGGACAGGGTCGGAATCGACGCCGCGGCGGTTCTTCAAGCGGCCTTTCCCACCGCCGTCGCCAGCGAAGCACATAAAGGCGGTGCTGGCGCGGCGGCAGGGGTCAGTGAAGCCGAACGAGGCGAGCATACCGGAGGGAAGCGAGGCCGGCGGCGACGACGGCGTGGCGGTTGCCCTGGACAAGAGCTTCGGGTTCTCGAAGCATTTCAAGAACAAGTACGAACTTGGGAGTGAAGTTGGGCGAGGGCATTTTGGGTACACTTGTGCTGCTAAGTTCAAGAAGGGAGACCTCAAGGGTCACCAGGTTGCTGTCAAGGTTATCCCCAAAGCTAAGATGACAACTGCAATTGCTATTGAGGATGTGAGAAGGGAAGTGAAAATATTGAGAGCTTTGACGGGACATAAGAATCTAGTACAGTTCTATGATGCATATGAAGATCACGATAATGTCTATATAGTAATGGAATTGTGTGAAGGAGGTGAGCTGTTGGATAGAATACTATCAAGAGGAGGGAAATACACCGAAGAAGATGCAAAAGCTGTCCTCACGCAAATTCTGAATGTTGTTGCATTTTGCCATATGCAGGGTGTTGTGCACCGTGATCTTAAACCCGAGAACTTCTTGTTTGCATCCAAAGATGAGAACTCAGAGCTGAAGGCCATAGACTTTGGGTTGTCGGATTTCGTTAAACCAGATGAAAGGCTTAATGATATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGAGCTTACAGTACTGAGGCTGACATCTGGAGTATTGGTGTAATCGCGTATATTTTATTATGTGGCAGCCGTCCGTTTTGGGCACGGACTGAATCAGGGATATTTCGTGCTGTATTGAAAGCCGATCCAAGTTTCGAAGAACCTCCTTGGCCTTCTCTGTCGGACGAAGCAAAGGATTTCGTAAAGCGACTACTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCACAAGCATTATGCCATCCATGGATTAAAAATTATAAGGATGTGAAAGCACCCCTCGATATTCTAATGTTCAAGCTCATGAAGTCATACATGCGCTCCTCATCTTTACGAAAAGCAGCTTTAAGGGCTCTGTCGAAGACGTTAGCTGTTGACGAGGTGTACTATTTGAAAGAGCAGTTTTCACTATTAGAACCAAACAAAAATGGCACCATTAGCTTAGAAAATATCAAAGCGGCCTTGATGAAGAATGCAACCGATGCTATGAAGGAGTCTCGCATTCCTGATTTTTTGGGATCGCTTAATGCATTGCAGTTTAGAAGGATGGATTTTGACGAGTTCTGTGCAGCGACTCTTAGTGTTCATCAACTTGAAGCGCTCGACCGGTGGGAGCAACATGCTCGCTGCGCCTATGAGCTTTTTGAAAAGGATGGAAACAGGGCCATAGTCATTGAGGAGCTAGCTTCGGAGCTAGGACTTGGTCCATCTGTTCCTGTTCACGCTGTTCTCCATGACTGGATTAGGCACACTGATGGAAAACTAAGCTTCCTTGGGTTTGTCAAATTGCTGCATGGTCCGTCTCGTAGTCTCGCCAAACCTCAATAG 1764 0.4756 MGLCVSKAPSESLSPSHNNNSKQEPEPASVNGGKKSPFFPFYSPSPAHYLFSKKSPARSPARTGSESTPRRFFKRPFPPPSPAKHIKAVLARRQGSVKPNEASIPEGSEAGGDDGVAVALDKSFGFSKHFKNKYELGSEVGRGHFGYTCAAKFKKGDLKGHQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVLTQILNVVAFCHMQGVVHRDLKPENFLFASKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFEEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALCHPWIKNYKDVKAPLDILMFKLMKSYMRSSSLRKAALRALSKTLAVDEVYYLKEQFSLLEPNKNGTISLENIKAALMKNATDAMKESRIPDFLGSLNALQFRRMDFDEFCAATLSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKPQ* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0018 587 MobiDBLite consensus disorder prediction 52 83 - -
Amo01g0018 587 ProSiteProfiles Protein kinase domain profile. 134 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0018 587 SUPERFAMILY EF-hand 424 578 IPR011992 -
Amo01g0018 587 Gene3D Phosphorylase Kinase; domain 1 127 222 - -
Amo01g0018 587 Gene3D Transferase(Phosphotransferase) domain 1 223 414 - -
Amo01g0018 587 MobiDBLite consensus disorder prediction 9 27 - -
Amo01g0018 587 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 36 582 - -
Amo01g0018 587 CDD STKc_CAMK 133 395 - -
Amo01g0018 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Amo01g0018 587 Gene3D - 415 505 - -
Amo01g0018 587 Pfam Protein kinase domain 134 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0018 587 SUPERFAMILY Protein kinase-like (PK-like) 131 427 IPR011009 -
Amo01g0018 587 ProSitePatterns Protein kinases ATP-binding region signature. 140 166 IPR017441 GO:0005524
Amo01g0018 587 Gene3D - 421 575 - -
Amo01g0018 587 SMART serkin_6 134 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0018 587 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 582 - -
Amo01g0018 587 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0018 Amo-Chr1 735964 744186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0018 1 585 EF-hand Containing Proteins AT3G50530 75.943 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo01g0018 Pkinase 1.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0018 K00924 - vvi:100264733 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0018 01 735964 744186 Amo05g1020 05 13377542 13382246 PCT