Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo01g0005 | ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGAGCGCAAGCCAATTTATAATTTGGATGATTCTGATGATGATGCTGATTTTTTGCCGAGAAAACCTGGGACTACTCAGGAAACATTTGAGAGGATAGATAGAAGTGATGCAAAAGAAAATTTGTGTCAAGCCTGTGGAGAAAGTGACAATCTTCTGAACTGTGATACATGCACTTATTCTTACCATCCCAAGTGTTTAGTTCCACCAATTAAAGGTCCCATTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCACTCAATGATATTGATAAAATATTAGATTGTGAGATGCGCCCTACTGTAGCTGCTGATGATGATGCCACAAATTTAGGAACAAAGCAAATATTTGTGAAACAATACCTTGTTAAGTGGAAGGGACTCTCGTACTTGCACTGCACATGGGTTCCAGAGAAAGAGTTTGTGAAAGCTTTCAAGGCTTATCCCCGTTTAAGGACCAAAGTGAATAATTTCCATCGTCAAATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAGTGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGTTGATGATGAGAAGGAATATCTTGTGAAATGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGACAGATATTTCAGCATTTCAACCAGAAATAGAAAGATTCAATAAATTCCGGTCTAGATCCAGCAAACTTGCCTCCATGAAGCAAAGAAGCAGTATTAAGGATGATGTTGAATTGAAGAAACAGCAGAAGGAATTTCAACAGTTTGAACATAGCCCTGAGTTTCTTTCAGGCGGTACGCTACATCCGTATCAGCTAGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTGGCTGATGAAATGGGGCTTGGCAAAACCATACAAAGTATTGCATTCTTAGCATCTCTTTTTGAAGAGGGTGTTTATCCACATTTGGTGGTTGCTCCACTTTCGACATTGCGGAACTGGGAACGTGAATTTGCAACATGGGCACCTCACATGAATGTCGTACGCATCATGGGTTTGAGTAGTATTGTTGCCGTTTATGCAATAACTCTTTTAATTGTATACTTGTTCTGCAGGTTATGTATGTTGGATCTGCCCAAGCCCGTTCTATCATAA | 1197 | 0.4085 | MSSLVERLRVRSERKPIYNLDDSDDDADFLPRKPGTTQETFERIDRSDAKENLCQACGESDNLLNCDTCTYSYHPKCLVPPIKGPIPDNWRCPECVSPLNDIDKILDCEMRPTVAADDDATNLGTKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKAYPRLRTKVNNFHRQMASVNTSDEDFVAIRPEWTTVDRILACRGVDDEKEYLVKWKELPYDECYWEFETDISAFQPEIERFNKFRSRSSKLASMKQRSSIKDDVELKKQQKEFQQFEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVYPHLVVAPLSTLRNWEREFATWAPHMNVVRIMGLSSIVAVYAITLLIVYLFCRLCMLDLPKPVLS* | 399 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo01g0005 | 398 | ProSiteProfiles | Rubredoxin-like domain profile. | 61 | 105 | IPR024934 | GO:0005506 | |
Amo01g0005 | 398 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 192 | 241 | IPR000953 | - | |
Amo01g0005 | 398 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 265 | 368 | IPR027417 | - | |
Amo01g0005 | 398 | Gene3D | - | 103 | 175 | - | - | |
Amo01g0005 | 398 | SMART | PHD_3 | 53 | 96 | IPR001965 | - | |
Amo01g0005 | 398 | CDD | DEXHc_Snf | 286 | 366 | - | - | |
Amo01g0005 | 398 | SMART | chromo_7 | 99 | 165 | IPR000953 | - | |
Amo01g0005 | 398 | SMART | chromo_7 | 190 | 244 | IPR000953 | - | |
Amo01g0005 | 398 | CDD | CD2_tandem | 190 | 241 | - | - | |
Amo01g0005 | 398 | ProSitePatterns | Zinc finger PHD-type signature. | 54 | 95 | IPR019786 | - | |
Amo01g0005 | 398 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 103 | 157 | IPR023780 | - | |
Amo01g0005 | 398 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 193 | 241 | IPR023780 | - | |
Amo01g0005 | 398 | PANTHER | CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE | 5 | 372 | - | - | |
Amo01g0005 | 398 | Gene3D | - | 179 | 242 | - | - | |
Amo01g0005 | 398 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 100 | 182 | IPR000953 | - | |
Amo01g0005 | 398 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 102 | IPR013083 | - | |
Amo01g0005 | 398 | ProSiteProfiles | Zinc finger PHD-type profile. | 51 | 98 | IPR019787 | - | |
Amo01g0005 | 398 | CDD | CD1_tandem | 98 | 172 | - | - | |
Amo01g0005 | 398 | Pfam | PHD-finger | 54 | 96 | IPR019787 | - | |
Amo01g0005 | 398 | SUPERFAMILY | Chromo domain-like | 177 | 242 | IPR016197 | - | |
Amo01g0005 | 398 | Pfam | SNF2-related domain | 306 | 364 | IPR000330 | GO:0005524|GO:0140658 | |
Amo01g0005 | 398 | Gene3D | - | 253 | 374 | IPR038718 | - | |
Amo01g0005 | 398 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 5 | 372 | - | - | |
Amo01g0005 | 398 | SUPERFAMILY | Chromo domain-like | 66 | 177 | IPR016197 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo01g0005 | Amo-Chr1 | 194775 | 200002 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo01g0005 | 51 | 96 | C2H2 Transcription Factor Family | AT3G01460 | 50.000 | 2.94e-07 | 50.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Amo01g0005 | SNF2_N | 1.9e-13 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo01g0005 | K11643 | - | gmx:100804203 | 667.151 |