Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0005 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGAGCGCAAGCCAATTTATAATTTGGATGATTCTGATGATGATGCTGATTTTTTGCCGAGAAAACCTGGGACTACTCAGGAAACATTTGAGAGGATAGATAGAAGTGATGCAAAAGAAAATTTGTGTCAAGCCTGTGGAGAAAGTGACAATCTTCTGAACTGTGATACATGCACTTATTCTTACCATCCCAAGTGTTTAGTTCCACCAATTAAAGGTCCCATTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCACTCAATGATATTGATAAAATATTAGATTGTGAGATGCGCCCTACTGTAGCTGCTGATGATGATGCCACAAATTTAGGAACAAAGCAAATATTTGTGAAACAATACCTTGTTAAGTGGAAGGGACTCTCGTACTTGCACTGCACATGGGTTCCAGAGAAAGAGTTTGTGAAAGCTTTCAAGGCTTATCCCCGTTTAAGGACCAAAGTGAATAATTTCCATCGTCAAATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAGTGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGTTGATGATGAGAAGGAATATCTTGTGAAATGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGACAGATATTTCAGCATTTCAACCAGAAATAGAAAGATTCAATAAATTCCGGTCTAGATCCAGCAAACTTGCCTCCATGAAGCAAAGAAGCAGTATTAAGGATGATGTTGAATTGAAGAAACAGCAGAAGGAATTTCAACAGTTTGAACATAGCCCTGAGTTTCTTTCAGGCGGTACGCTACATCCGTATCAGCTAGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTGGCTGATGAAATGGGGCTTGGCAAAACCATACAAAGTATTGCATTCTTAGCATCTCTTTTTGAAGAGGGTGTTTATCCACATTTGGTGGTTGCTCCACTTTCGACATTGCGGAACTGGGAACGTGAATTTGCAACATGGGCACCTCACATGAATGTCGTACGCATCATGGGTTTGAGTAGTATTGTTGCCGTTTATGCAATAACTCTTTTAATTGTATACTTGTTCTGCAGGTTATGTATGTTGGATCTGCCCAAGCCCGTTCTATCATAA 1197 0.4085 MSSLVERLRVRSERKPIYNLDDSDDDADFLPRKPGTTQETFERIDRSDAKENLCQACGESDNLLNCDTCTYSYHPKCLVPPIKGPIPDNWRCPECVSPLNDIDKILDCEMRPTVAADDDATNLGTKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKAYPRLRTKVNNFHRQMASVNTSDEDFVAIRPEWTTVDRILACRGVDDEKEYLVKWKELPYDECYWEFETDISAFQPEIERFNKFRSRSSKLASMKQRSSIKDDVELKKQQKEFQQFEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVYPHLVVAPLSTLRNWEREFATWAPHMNVVRIMGLSSIVAVYAITLLIVYLFCRLCMLDLPKPVLS* 399
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0005 398 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Amo01g0005 398 ProSiteProfiles Chromo and chromo shadow domain profile. 192 241 IPR000953 -
Amo01g0005 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 368 IPR027417 -
Amo01g0005 398 Gene3D - 103 175 - -
Amo01g0005 398 SMART PHD_3 53 96 IPR001965 -
Amo01g0005 398 CDD DEXHc_Snf 286 366 - -
Amo01g0005 398 SMART chromo_7 99 165 IPR000953 -
Amo01g0005 398 SMART chromo_7 190 244 IPR000953 -
Amo01g0005 398 CDD CD2_tandem 190 241 - -
Amo01g0005 398 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Amo01g0005 398 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 157 IPR023780 -
Amo01g0005 398 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Amo01g0005 398 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 372 - -
Amo01g0005 398 Gene3D - 179 242 - -
Amo01g0005 398 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Amo01g0005 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 102 IPR013083 -
Amo01g0005 398 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Amo01g0005 398 CDD CD1_tandem 98 172 - -
Amo01g0005 398 Pfam PHD-finger 54 96 IPR019787 -
Amo01g0005 398 SUPERFAMILY Chromo domain-like 177 242 IPR016197 -
Amo01g0005 398 Pfam SNF2-related domain 306 364 IPR000330 GO:0005524|GO:0140658
Amo01g0005 398 Gene3D - 253 374 IPR038718 -
Amo01g0005 398 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 372 - -
Amo01g0005 398 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo01g0005 Amo-Chr1 194775 200002 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0005 51 96 C2H2 Transcription Factor Family AT3G01460 50.000 2.94e-07 50.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo01g0005 SNF2_N 1.9e-13 CL0023
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0005 K11643 - gmx:100804203 667.151