Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2161 ATGGCCGCTGGTCGCTCTTTCCTTCTCTTGCCTCTCTTCCTCCTCACTCTCTCTTTCTCTCCCACCTGCCTCTCTAATTCTGAGGACGACGCCCTCCTCCAACTTAAAAGATCCTTCTCCCCTTCCTCCTCTCTCTCTTCTTGGGTCCTCAATTCCTCTGCTTGCTCTGCCAAGTGGGCCGGCGTCTATTGCACCAACAACCTCGTCGTCGGTTTGCACTTCTCCCACATGGCTCTCTCCGGCAACATTGACATTGATGCCCTCCTTCGTCTCCCTGCCCTTCGCAGCATTGGCTTTGTTAACAACTCCTTCTTTGGTCCCATCCCCCAATTCAATAAACTCACCACCCTTAAGGCTGTCTTCTTGACCACCAACCATTTCTCTGGACCTATTCCTTCCGATTTCTTCGCAAGCCTCACCGCCATAAAGAAAATCAGCCTCTCTGGTAATAATTTCTCTGGCAATATACCCAACTCTCTAGTCAGGCTCCCATTGTTGGCAGAGTTGCGCCTCGAGGACAATGAATTCTCAGGAGCCATTCCGTCTTTCAGTCAACACTTTCGACTGTTCAACGTTTCCAACAACCGATTGGAAGGAGCCATCCCCGACGAACTGGCCAAGTTCAACGCGACATGCTTCTATGGAAACCCAAGGTTGTGTGGGAAAGTGGTGGGAAATGAGTGCAAGGGGCAGGAGAAACAAAGTAGTAGTTTGGTGAAGGTAGTGATAATGGTTGTGATGGTTGTGATGGTAGTGGTGCTGATAGTGGTATTGATAAAGACGGCAAGGAGACGAGAGGGCGAAAAAAATGTGGGAGGGATAGGGGATAGAAAAGATGGTGGAGGGGAAGAGATGGTGCAAGTGCATGTGCCAGGCTCCAACCATAGCAAGACATCAGAATCAGGTAGGAAAAGGTCAAATTATGTATCAAAAAAGGATGCAACAGGGGACTTGGTGATGGTGAACGAGGAGAAGGGGGTGTTTGGGATGCCTGATTTGATGAAGGCCGCAGCCGAGGTGCTGGGGAACGGGGGCATGGGTTCTGCTTACAAGGCCACCATGAGCAGTGGATTGTCGGTAGTGGTAAAAAGGATGAGGGAGATCAACAAGATTAGCAGAGACTCCTTCGACGCCGAGATGAGGCAGTTTGGCAGAATCAGACACCCCAATATTCTCACCCCTTTGGCCTACCATTATCGCAAGGAGGAGAAGCTCATTGTGTCTGAGTACATTCCCAAAGGTAGTCTGTTGTATGTCCTGCATGGGGATAGGGGAACATGCCATGCCGACCTCAACTGGCTCACCAGGTTAAAGATTGTCAAGGGAATCGCCAACGCCTTGAGTTTCCTGCATTCTCAATTCGGATCCCACGATCTACCCCACGGAAACCTCAAGTCCAGCAATGTTCTGCTAAGTGATACATACGAGCCGCTCCTCAATGACTTCGCCTTTCCTCCCCTCATCAATCCAAACAATGCTCCCCAGGCACTGTTCGCCTGCAAAACTCCAGATTACACACAGTACCGGCGAGTGTCCCACAAGACCGATGTATATTGTCTCGGAATCATCATCCTGGAAATCATGACTGGCAAATTCCCTTCTCAATATCACAACAATGGCAAGGGCGGCACCGATGTTGTACAGTGGGTGTTGATGGCTATCGCCGAGGGAAGAGAAGCCGAATTGATAGACCCTGACATTCATACTAACAACACCCACTCCCCCAATCACATGCTGCAGCTTCTCCAGATCGGGGCTAGCTGCACAGAATCCAATCCTCAACGACGACTTAACCTCAGTGAAGCCATTAGAATGATAGAGGATATTCAAGTCTAA 1836 0.4989 MAAGRSFLLLPLFLLTLSFSPTCLSNSEDDALLQLKRSFSPSSSLSSWVLNSSACSAKWAGVYCTNNLVVGLHFSHMALSGNIDIDALLRLPALRSIGFVNNSFFGPIPQFNKLTTLKAVFLTTNHFSGPIPSDFFASLTAIKKISLSGNNFSGNIPNSLVRLPLLAELRLEDNEFSGAIPSFSQHFRLFNVSNNRLEGAIPDELAKFNATCFYGNPRLCGKVVGNECKGQEKQSSSLVKVVIMVVMVVMVVVLIVVLIKTARRREGEKNVGGIGDRKDGGGEEMVQVHVPGSNHSKTSESGRKRSNYVSKKDATGDLVMVNEEKGVFGMPDLMKAAAEVLGNGGMGSAYKATMSSGLSVVVKRMREINKISRDSFDAEMRQFGRIRHPNILTPLAYHYRKEEKLIVSEYIPKGSLLYVLHGDRGTCHADLNWLTRLKIVKGIANALSFLHSQFGSHDLPHGNLKSSNVLLSDTYEPLLNDFAFPPLINPNNAPQALFACKTPDYTQYRRVSHKTDVYCLGIIILEIMTGKFPSQYHNNGKGGTDVVQWVLMAIAEGREAELIDPDIHTNNTHSPNHMLQLLQIGASCTESNPQRRLNLSEAIRMIEDIQV 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2161 611 Gene3D Transferase(Phosphotransferase) domain 1 411 611 - -
Alju13g2161 611 ProSiteProfiles Protein kinase domain profile. 335 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g2161 611 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Alju13g2161 611 FunFam Nuclear pore complex protein NUP107 25 182 - -
Alju13g2161 611 Gene3D Ribonuclease Inhibitor 138 230 IPR032675 -
Alju13g2161 611 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Alju13g2161 611 SUPERFAMILY L domain-like 25 209 - -
Alju13g2161 611 Gene3D Phosphorylase Kinase; domain 1 304 410 - -
Alju13g2161 611 Gene3D Ribonuclease Inhibitor 27 137 IPR032675 -
Alju13g2161 611 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Alju13g2161 611 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 610 IPR046959 -
Alju13g2161 611 Pfam Protein kinase domain 339 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g2161 611 SUPERFAMILY Protein kinase-like (PK-like) 339 606 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2161 Alju-ChrAlju13 38534674 38536509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2161 6 611 Receptor kinase-like Gene Family AT3G42880 48.742 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Alju13g2161 Pkinase 4.6e-26 CL0016