Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2154 ATGAAATTTGAAGGCCCAGTGAATCGCAGAAGAAGATCCAGCAAGAAGCCAGAATTGGTGGAGGGAATGGCAATCCCATCGATTGAGGCAGTGGACGTTGAAGCTTTCAACTGCACACCCATCTGGAACAAGGGCACAAGCAAATCAAATGCAATCTCTGTCGAGCAGTACACCTACGAGCGAGACCTCCACCTATCGATCATGGCTTCTCTAGGCAAAGCAACTCCTGGCGCAAAAACCTTCATCGACCTTTCCGACTGCGATGAGGATGAGGATGAGGAGGTGAGAATTCTTAGGTTTCAGCCTAAAAACAGCACTTTCAGGAAACGAAGGAAGTCCACCTTTGAAACAGGGGAATCTTCCAACTCTGTACCATTTGTTTGCGAAATCTGTGCTGATACCAATACTGCTAACGAGTCGTTTAACATCAGTGGTTGCTCTCACGCTTACTGTACAGGGTGTGTGGTTAGGTATGTGGGAACAAAGCTACAAGAAAATGTTGTGAACATTAGATGTCCAGTGCCAGAGTGTGGAGGACTGTTGGAGCCTGAGGATTGCCGTGGGATTCTTCCTCGGGAAGTGTACGATAGGTGGGGGGTTGCCTTGTGTGAGGCTGTGATACTAGCAGAAGAGAAGTTTTACTGCCCTTATAAGGACTGTTCGGCGCTGCTGATTTTTGATGGAGGAGAAAGGACCATCACAGAATCGGAGTGTCCCAACTGTAGGAGACTCTTCTGTGCGCAGTGTAAGGTACCGTGGCATTCAGGAATCGAGTGCGCTGAGTTTCAGAAATTAGGCAAGGACGAGAGAGAGAGGGAAGATATCATGCTCATGCAACTTGCTCGCAGCCGTAAGTGGAGGAGGTGTCCCCGGTGTAGGTTCTACGTCGAAAAGTCTTCTGGCTGCCTCTATATGAAATGCAGGTGTGGAACTGCCTTCTGTTATAACTGTGGAACTGTTTCAGGAAATAATTATCATTTTTGCCATAACTGTAGACGCTAA 1002 0.477 MKFEGPVNRRRRSSKKPELVEGMAIPSIEAVDVEAFNCTPIWNKGTSKSNAISVEQYTYERDLHLSIMASLGKATPGAKTFIDLSDCDEDEDEEVRILRFQPKNSTFRKRRKSTFETGESSNSVPFVCEICADTNTANESFNISGCSHAYCTGCVVRYVGTKLQENVVNIRCPVPECGGLLEPEDCRGILPREVYDRWGVALCEAVILAEEKFYCPYKDCSALLIFDGGERTITESECPNCRRLFCAQCKVPWHSGIECAEFQKLGKDEREREDIMLMQLARSRKWRRCPRCRFYVEKSSGCLYMKCRCGTAFCYNCGTVSGNNYHFCHNCRR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2154 333 SUPERFAMILY RING/U-box 202 264 - -
Alju13g2154 333 Gene3D - 213 260 - -
Alju13g2154 333 SUPERFAMILY RING/U-box 126 205 - -
Alju13g2154 333 ProSiteProfiles Zinc finger RING-type profile. 128 176 IPR001841 -
Alju13g2154 333 ProSiteProfiles TRIAD supradomain profile. 124 333 IPR044066 -
Alju13g2154 333 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 91 325 IPR031127 GO:0004842|GO:0016567
Alju13g2154 333 CDD BRcat_RBR_unk 211 262 - -
Alju13g2154 333 Gene3D - 261 333 - -
Alju13g2154 333 SUPERFAMILY RING/U-box 270 332 - -
Alju13g2154 333 SMART ibrneu5 196 259 IPR002867 GO:0008270
Alju13g2154 333 SMART ibrneu5 269 331 IPR002867 GO:0008270
Alju13g2154 333 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Alju13g2154 333 FunFam RBR-type E3 ubiquitin transferase 261 333 - -
Alju13g2154 333 CDD Rcat_RBR_unk 285 319 - -
Alju13g2154 333 Pfam IBR domain, a half RING-finger domain 208 259 IPR002867 GO:0008270
Alju13g2154 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 209 IPR013083 -
Alju13g2154 333 FunFam RBR-type E3 ubiquitin transferase 123 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2154 Alju-ChrAlju13 38422700 38423973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2154 128 319 C3H Transcription Factor Family AT2G19610 28.856 2.69e-23 97.8