Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2127 ATGACAGCGCCACGCCGGACAAAAGCCATGCAAGCTCATGGCCGAAAGCAGGAAGCTCATTCTACACAAACAATTAGGTCAGTGGGTGTCTCTTCCGCACAAAGAATTCGATCATTTTATATGGTGAGGAATCAAAGGTTGGTGCAATCTCATTGGCAAAACCTTGACGAGATACTCCCAGAAGCAGAGCACCGTTGGTTTCGACCTCCGGAAGTCTGCGAAATACTTCGCAATTATCAGAAGTTTGACTTAACACCAATTCCGCCTATTAGACCTCCAGCTGGATCACTGTTATTGTTTGATCGAAAAGTTGTTCGCTGCTTTCGCAAAGATGGTCACCAATGGAGGAAGAGAAAAGATGGGAATACTGTGAGGGAAGCTCATGAAAGGTTAAAGGCTGGTAGAGTGGATGTTCTAAAATGTTACTATGCTCATGGAGAAGATAATGAGAACTTTCAACGGCGATGTTATTGGATGCTTGATGAAAAGTTTGAGCACATTGTCCTTGTTCATTACCGAGAAGTTAAAGAGGGGTACAAGGCTGCCATTTCACATTTCCCTGCAGGTCCAGTGCCTTTGGTTGGTAGCCCTTTGAGTAGTTCTGCACAAGATAGGGCATCTCTTTCTTTAGTTCAAGAACCTTATTCATCAAGTGCAAATAGAGTTGATTGCTATGGAATAGCATTATCTTCTGAGTATGACGATATGGACTCTGCGAGTGGTCATCAAACCGCGTTGCACACTGAACCTCTCAGCAGTCAAAGTTGGCCTTGGTTTACACATGAAACTACTGGTTTTTCTCAGTTGTCAAGGAGTCCATGTAATTCATGGTCATCATCTCTTCCTAGCTTTTATCCTGCATCTTTGGCACCTTCATGGCCATTAAATCAAAACTCTAGCAGAGACACAATTAGTATACATGATAGAAATCTTCATGTTGAAGGATCTGACGAAGGCTCCCAAGCTGATTTCTTTGACCATAAGCTAAGCAATGCAAGGTTTGATCCAGATAGTGCTATGCGAAATGCTGTGACTTGTGGAAATAGGCTGATTAATGAAATGCACATCCAATCAGTTATAGGAGTTTCCAAGTCAGTAAATCAGGTACAAAAAGAGGATGATTTAAATTCAGATTGTATCCAATTTAATGGTCCTTCTGATCATCCAGTTCTTGAAGCTTCAACTGTTATAGTAGACCAGCAACATAACAATGGAAGTACATATAGTTGTGAATTAGAACAATTTGAATCTGGGGAGCTGAAGAAACTTGACAGTTTTGGAAGGTGGATGGCTAAGGAAATTGGTGGAGACTGTGATGACTGTTTGATGGCTTCAGACTCTGGCAACTATTGGGATACACTTGATCCTCATAATAGCGATAAGGTAGTGTCCAATTTACATATGCAATTGGATGTGGATTCATTGGGTCCTTCCCTTTCTCAAGAACAACTATTTAGCATCCTTGACTTTTCTCCAGATTGGGTATTTTCTGGGTCTGAAACAAAGGTTTTAATTGTGGGCACATTCCTGGGGAGCAAGAAAGTTGCTACCGAGACAAAGTGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTAAAGTGTCGACAGACAATGTCATATATTGTCAGGCTCCTTTTCATTCACCTGGTCGAGTTCCATTCTACGTTACCTGTAGTAATAGGTTAGCTTGCAGTGAGGTGAGAGAATTTGAATATCGTGAAAACCCTATTATAGGTGCTAGAATGATGCCAGAAGATGAGGTATGCCTTCAATTGCGATTACTTAAGTTAGTAGATCTGGAACCTGACAAAATCTGGCTGAACTGCTCTATTTCTCAATGTGAGAAATGTAAGCTTAAAGAAACGATCTACTTGACAAGAGAAGGAAGTGGCATATGTCAAGATGCTTTGAAGATCAATGTAAGTGATCATGTGAACCATAGAGATGTCCTAGTTCAGAAACTCTTGAGAGACAAGCTTTTGCAGTGGTTAGTGGTAAAGATCCATGAAGAAGGTAAAGGACCGAATGTGTTGGATAATGAAGGCCAAGGAGTGATACATTTGGCAGCTTCTCTTGGCTATGCATGGGCTATGGGTCCCATAGTTGCTGCTGGTGTCAATCCTAACTTTAGAGATGCCCGTGGAAGAACAGGACTTCACTGGGCATCTTATTTTGGAAGAGAGGAAACTTTGATTGCACTAGTCAAACTAGGTGGAGCCCCAGGTGCTGTTGAGGATCCAACATCAGCATTTCCTCAAGGACGAACTGCTGCAGATTTAGCTTCAAGTAGAGGGCATAAGGGCATTGCAGCATATTTGGCTGAGGCCGATCTGACAAGCCACTTATGGACTGTCAATGAGAATGAGATAGACATCATTGCCGCAAACAAAGCAGCTGACAGAGCTTTTGAGACTGCTCTAGCTGACTCGTCGAATATCACAATGCATGAGCAACACTTTCTAAAAGAGTCACTTGCAGTTTTGCGAAAATCAGCTCATGCAGCTGCATTAATTCAAGCTGCATTCAAAGCAAGATCATTCCGTCGGAGACATTTAATTAATTATACTAGTGGTATACCTGAAATAGCACTAAACCTAGTTGCAGTTGGTTCCTTGAACAAGGTTCAGAAAATGAGTCACTTTGAAGTTCATCTGCACTCTGCCGCTTTAAAGATCCAAAAGAGATATCGGGGGTGGAAGGGAAGGAAAGAATTTTTGAAGATACGCACCCGTATTGTAAAAATTCAGGCCCATGTTAGAGGACACCAAGCTCGTAATAAGTACAAACAGGTTGTTTGGTCAGTTAGCATTGTGGAGAAAGCAATACTGCGATGGAGGCGGAAAAGACCTGGTCTGCGAGGATTCCGAGTTAAGCAGACATTTGGAATTATGGCTTCAAGTGTTGATAAAAGTGATGAATATGAATTTCTGAGCATTGGACGGAAACAGAAATATGATGATGTTAGTAAGGCTCTGGCTAGAGTCAAGTCCATGGTGTATCACCCTGAGGCACGTGATCAGTATATGAGGCTGGTCATGAAATTTGAGGATCTCAAGGTACTCTTTTGTTAG 3072 0.4196 MTAPRRTKAMQAHGRKQEAHSTQTIRSVGVSSAQRIRSFYMVRNQRLVQSHWQNLDEILPEAEHRWFRPPEVCEILRNYQKFDLTPIPPIRPPAGSLLLFDRKVVRCFRKDGHQWRKRKDGNTVREAHERLKAGRVDVLKCYYAHGEDNENFQRRCYWMLDEKFEHIVLVHYREVKEGYKAAISHFPAGPVPLVGSPLSSSAQDRASLSLVQEPYSSSANRVDCYGIALSSEYDDMDSASGHQTALHTEPLSSQSWPWFTHETTGFSQLSRSPCNSWSSSLPSFYPASLAPSWPLNQNSSRDTISIHDRNLHVEGSDEGSQADFFDHKLSNARFDPDSAMRNAVTCGNRLINEMHIQSVIGVSKSVNQVQKEDDLNSDCIQFNGPSDHPVLEASTVIVDQQHNNGSTYSCELEQFESGELKKLDSFGRWMAKEIGGDCDDCLMASDSGNYWDTLDPHNSDKVVSNLHMQLDVDSLGPSLSQEQLFSILDFSPDWVFSGSETKVLIVGTFLGSKKVATETKWGCMFGEIEVSAKVSTDNVIYCQAPFHSPGRVPFYVTCSNRLACSEVREFEYRENPIIGARMMPEDEVCLQLRLLKLVDLEPDKIWLNCSISQCEKCKLKETIYLTREGSGICQDALKINVSDHVNHRDVLVQKLLRDKLLQWLVVKIHEEGKGPNVLDNEGQGVIHLAASLGYAWAMGPIVAAGVNPNFRDARGRTGLHWASYFGREETLIALVKLGGAPGAVEDPTSAFPQGRTAADLASSRGHKGIAAYLAEADLTSHLWTVNENEIDIIAANKAADRAFETALADSSNITMHEQHFLKESLAVLRKSAHAAALIQAAFKARSFRRRHLINYTSGIPEIALNLVAVGSLNKVQKMSHFEVHLHSAALKIQKRYRGWKGRKEFLKIRTRIVKIQAHVRGHQARNKYKQVVWSVSIVEKAILRWRRKRPGLRGFRVKQTFGIMASSVDKSDEYEFLSIGRKQKYDDVSKALARVKSMVYHPEARDQYMRLVMKFEDLKVLFC 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2127 1023 Gene3D - 884 932 - -
Alju13g2127 1023 Gene3D - 647 812 IPR036770 -
Alju13g2127 1023 Gene3D Immunoglobulins 480 578 IPR013783 -
Alju13g2127 1023 SUPERFAMILY E set domains 487 573 IPR014756 -
Alju13g2127 1023 SMART ANK_2a 753 782 IPR002110 GO:0005515
Alju13g2127 1023 SMART ANK_2a 714 743 IPR002110 GO:0005515
Alju13g2127 1023 SMART iq_5 830 852 IPR000048 GO:0005515
Alju13g2127 1023 SMART iq_5 884 906 IPR000048 GO:0005515
Alju13g2127 1023 SMART iq_5 907 929 IPR000048 GO:0005515
Alju13g2127 1023 Pfam CG-1 domain 61 174 IPR005559 GO:0003677
Alju13g2127 1023 ProSiteProfiles IQ motif profile. 885 914 IPR000048 GO:0005515
Alju13g2127 1023 SMART CG_1_2 58 176 IPR005559 GO:0003677
Alju13g2127 1023 Pfam IQ calmodulin-binding motif 886 905 IPR000048 GO:0005515
Alju13g2127 1023 Pfam IQ calmodulin-binding motif 912 929 IPR000048 GO:0005515
Alju13g2127 1023 FunFam Calmodulin-binding transcription activator 2 884 932 - -
Alju13g2127 1023 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 56 1015 - -
Alju13g2127 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 935 IPR027417 -
Alju13g2127 1023 SUPERFAMILY Ankyrin repeat 665 777 IPR036770 -
Alju13g2127 1023 MobiDBLite consensus disorder prediction 1 26 - -
Alju13g2127 1023 FunFam Calmodulin-binding transcription activator 2 480 576 - -
Alju13g2127 1023 Pfam IPT/TIG domain 487 572 IPR002909 -
Alju13g2127 1023 CDD IPT 486 574 - -
Alju13g2127 1023 ProSiteProfiles IQ motif profile. 908 936 IPR000048 GO:0005515
Alju13g2127 1023 ProSiteProfiles CG-1 DNA-binding domain profile. 55 181 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2127 Alju-ChrAlju13 38252712 38259510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2127 99 1019 CAMTA Transcription Factor Family AT2G22300 38.703 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Alju13g2127 CG-1 2e-47 No_clan