Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju13g2115 | ATGGCTGACGTTACCCAACTTCCCTGCGTTTGTGACGGTGTCTGTATGATCTGCAAGGTGCCGCCGGCAGACGAGGAGAAGTTGACGTGCAAAACCTGCGCGACCCAATGGCATGTTACCTGTCTCTCCAATCCTCTGGCCACCATGGCCGAGACGGTTCAGTGGGAATGCCCCGATTGCTGTACTCCGCCATCCGATTTTCCGCCGGTAGCTATTGGCAAAGCCGTACTCGATGGGGCTGGTGACTTGATGGCTGCAATCCGAGCCATCGAAGCTGACGCTTCTTTCTCGGATTTGGACAAGGCGAATAAACGTCAGATGCTTATGAGTGGAACGGCTGCGCCGGAGGCAGACGAAGGTGGCTTGGAGAATAAGGTAGAAGGCGGAGCGAAGGGTGTCTTGGATATCCTCAGCGGGGCTTTGAACTGCTCCTTCTGCATGAAGTTGCCCGAGAGGCCCGTCACGATAACTTTACTCCTTGCGGGGCATAATTTCTGTCTGAAATGCTTCCAGAAATGGATTGGGCAAGGAAAACTAACATGTGCAAAATGTCGACGCAGTATCCCCTCCAAAATGGCAAGCGAGCCTCGTATAAATTCTGTATTAGTTATTGCTATTCGCATGGCTAAAATATCCAAAAACACTGGTTCTGGAGAAGCTTCTAAAGCTTTTCATTTTGTGCACAACCAAGATAGGCCAGAGAAGGCATATACAACAGAGCGGGCCCAGAGGAAGGGCAACGCAAATGCGGCTAGTGGAAAGATTTTTGTAACTGTGCCTCAGGATCATGTTGGTCCAATCCCTGCTTAG | 810 | 0.5099 | MADVTQLPCVCDGVCMICKVPPADEEKLTCKTCATQWHVTCLSNPLATMAETVQWECPDCCTPPSDFPPVAIGKAVLDGAGDLMAAIRAIEADASFSDLDKANKRQMLMSGTAAPEADEGGLENKVEGGAKGVLDILSGALNCSFCMKLPERPVTITLLLAGHNFCLKCFQKWIGQGKLTCAKCRRSIPSKMASEPRINSVLVIAIRMAKISKNTGSGEASKAFHFVHNQDRPEKAYTTERAQRKGNANAASGKIFVTVPQDHVGPIPA | 269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju13g2115 | 269 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 212 | IPR013083 | - | |
| Alju13g2115 | 269 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 4 | 268 | IPR045134 | - | |
| Alju13g2115 | 269 | Pfam | Zinc finger, C3HC4 type (RING finger) | 143 | 184 | IPR018957 | GO:0046872 | |
| Alju13g2115 | 269 | SUPERFAMILY | FYVE/PHD zinc finger | 9 | 65 | IPR011011 | - | |
| Alju13g2115 | 269 | ProSitePatterns | Zinc finger PHD-type signature. | 9 | 60 | IPR019786 | - | |
| Alju13g2115 | 269 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 185 | IPR001841 | - | |
| Alju13g2115 | 269 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 70 | IPR013083 | - | |
| Alju13g2115 | 269 | SUPERFAMILY | RING/U-box | 135 | 192 | - | - | |
| Alju13g2115 | 269 | SMART | PHD_3 | 14 | 61 | IPR001965 | - | |
| Alju13g2115 | 269 | ProSiteProfiles | Zinc finger PHD-type profile. | 12 | 63 | IPR019787 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju13g2115 | Alju-ChrAlju13 | 38123202 | 38124609 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju13g2115 | 1 | 269 | C2H2 Transcription Factor Family | AT5G39550 | 52.381 | 1.40e-81 | 255 |