Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2113 ATGGATGTCAAAGGAAGAGGAAGCACCTCCCCCACTCTCCAACAAGCCGACGCCGTCGACGACGACCTTGACCTCCGACGAGGCCCTTGGACCGTCGACGAGGACCTCACCCTCATCAATTACATCACCACTCACGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTCCGCCGGCCTCAAACGTACGGGCAAGAGCTGCAGACTGAGGTGGCTCAACTATCTCCGTCCTGATGTCCGACGAGGAAACATCACACTGGAAGAACAGCTCATGATTCTCGAACTTCATTCTCGCTGGGGAAACAGGTGGTCCAAGATAGCCCAGTATTTGCCGGGAAGAACCGACAATGAGATCAAGAATTACTGGAGAACCCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTGGTAGAGCGCATTCAAGCCGCCGCCGCCGCCACAACGGCAAGTTCCCAGACGTTATCTGCCGCCACAACCGTCACCGCGAATTCCACATACAATCATTATAATAATAACATGCAAGTTGAGAATGGGAACATGCTGATAAACCCGGCGGCGGCCATCATGAATAATAATAATGACTTTGGAGGCTCCCAGGTCACACAGAGCTACACGCCGGAAAACAGCAGCACGGGCGCTTCATCGGACTCGTTCGGAACACAGGTTTCGCCGGTGTCGGAATTGACTGATTATTACAGTACTGTCCCTAATAATAATCAGGAATACTACCAACCCTCTCAGATGAGCTACTCTGATTGCATCACCAGCCCATCTGGGTTATACCCTCAAGGATTGGATTATTCCCAGGTGATGGATCCAAACAACCCCTGGATTCAGGGCGGCGACACGTTGGACAATTTGTGGAATGTTGAGATTGAGAATATGATGTTTTTACAGCAGCAGCTCGATATTGACAGCATGTAA 975 0.5108 MDVKGRGSTSPTLQQADAVDDDLDLRRGPWTVDEDLTLINYITTHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAATTASSQTLSAATTVTANSTYNHYNNNMQVENGNMLINPAAAIMNNNNDFGGSQVTQSYTPENSSTGASSDSFGTQVSPVSELTDYYSTVPNNNQEYYQPSQMSYSDCITSPSGLYPQGLDYSQVMDPNNPWIQGGDTLDNLWNVEIENMMFLQQQLDIDSM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2113 324 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Alju13g2113 324 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Alju13g2113 324 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Alju13g2113 324 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Alju13g2113 324 Coils Coil 319 324 - -
Alju13g2113 324 CDD SANT 84 123 IPR001005 -
Alju13g2113 324 FunFam MYB transcription factor 84 147 - -
Alju13g2113 324 MobiDBLite consensus disorder prediction 214 238 - -
Alju13g2113 324 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Alju13g2113 324 Gene3D - 27 79 - -
Alju13g2113 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Alju13g2113 324 FunFam Myb transcription factor 27 79 - -
Alju13g2113 324 Gene3D - 84 147 - -
Alju13g2113 324 SMART sant 26 76 IPR001005 -
Alju13g2113 324 SMART sant 79 127 IPR001005 -
Alju13g2113 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Alju13g2113 324 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Alju13g2113 324 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2113 Alju-ChrAlju13 38095461 38097133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2113 1 307 MYB Transcription Factor Family AT3G06490 54.799 5.66e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju13g2113 Myb_DNA-binding 1.8e-14 CL0123