Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2109 ATGATTGTGGTGATGTACGCACGTAAGTTAATTTGCTCCTTTATCTCTGGTGTTTGCGTAGAGAAGAATATAGTAATGGAGGAAAAGCTACCACCTGGGTTCAGATTCCATCCGACAGACGAAGAGCTGATCACATATTACCTAACGAGGAAGGTGTGTGAAAGCAGCTTCACATGCAAAGCGATAGCAGAAGTTGATATGAACAAGAATGAGCCGTGGGATCTGCCGGGAAAAGCGTCGATGGGAGAGAAAGAATGGTATTTCTACAGCGTGAGGGACAGGAAGTACCCGACGGGGCTGAGAACCAACAGGGCGACGGAAGCAGGGTACTGGAAGACAACTGGCAAAGACAAAGAGATCATGAGGGATGGGGCTATCATGGTTGGAATGAAGAAGACGCTGGTGTTCTACAAGGGCAGGGCTCCCAGGGGTGAGAAAAGCAACTGGGTTATGCACGAGTATCGCCTCCACTCCTTTAGGGCTTCCAAGGAAGAATGGGTGGTATGCAGGGTGTTCCAGAAAAGCTCGTCAGCGGCAAAGAAAGCACAACAGACGTCATCCTCACAAGTATCTCTGGACTCTCCTCCTCATGATGATACCTCTTTGCTCCATGAATTCGGCGACGTTACTGACCTCCCCAATTTAAACACCATCACCCCAACAAATTCATCAACCACCAATGCGAACTGGCCACCACCTCCATCTGATCACCGCCTTCCCTCTCTTCCGTCCCTCCCATGGTCCTCTGGTTTGCTCAATCCAAACCTTTCTGTGAATTCCTTGCTTCTCAAGGCATTGCAGCTTCGCACCTGTCAACAAAGAGAAATTGCAACCATAACCGATCATTTTGCTTCCTCCTACATGCCGCCTCAAGGAGTTTCCCAAGTAATGGGGACTACTCATCATCTCACCCCAAGTCTCACGCTCGAAGCTTCTTCCTCATCCAAGGTTTTACATGACATGCCACAGCAACAGCGACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACCGTTCAATCTGGACTCCATTTGGTGA 1038 0.4942 MIVVMYARKLICSFISGVCVEKNIVMEEKLPPGFRFHPTDEELITYYLTRKVCESSFTCKAIAEVDMNKNEPWDLPGKASMGEKEWYFYSVRDRKYPTGLRTNRATEAGYWKTTGKDKEIMRDGAIMVGMKKTLVFYKGRAPRGEKSNWVMHEYRLHSFRASKEEWVVCRVFQKSSSAAKKAQQTSSSQVSLDSPPHDDTSLLHEFGDVTDLPNLNTITPTNSSTTNANWPPPPSDHRLPSLPSLPWSSGLLNPNLSVNSLLLKALQLRTCQQREIATITDHFASSYMPPQGVSQVMGTTHHLTPSLTLEASSSSKVLHDMPQQQRQQQQQQQQQQQPFNLDSIW 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2109 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 325 - -
Alju13g2109 345 Gene3D NAC domain 39 179 IPR036093 GO:0003677|GO:0006355
Alju13g2109 345 ProSiteProfiles NAC domain profile. 30 174 IPR003441 GO:0003677|GO:0006355
Alju13g2109 345 FunFam NAC domain-containing protein 100-like 39 178 - -
Alju13g2109 345 Pfam No apical meristem (NAM) protein 31 156 IPR003441 GO:0003677|GO:0006355
Alju13g2109 345 MobiDBLite consensus disorder prediction 178 206 - -
Alju13g2109 345 MobiDBLite consensus disorder prediction 314 345 - -
Alju13g2109 345 SUPERFAMILY NAC domain 25 174 IPR036093 GO:0003677|GO:0006355
Alju13g2109 345 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2109 Alju-ChrAlju13 38062201 38063479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2109 26 345 NAC Transcription Factor Family AT3G18400 54.335 3.75e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju13g2109 NAM 1.2e-39 No_clan