Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2105 ATGGCTGAGTTTACCACATATTTGCAAGCCTTAAGGTCACCTTTTCGTTTCTTAGATATTGATCCAAGCATGGAACTGATAAACCAATCCACAGGGATGAGTCCACGTGTCTTGGACAACTCAAATCTTAATTTTCAGAGCTTCGTGCCTTTCTCCTGTGACACTTCCTTAGGTTTCCCTGAGCCTCAATTTGAAGGAAAATTGGAGGAAAGTTTTCCTAGCCTTGTCCATCAGGTCAATCACAATGCTTTACCAGTTTCTTCGCCCAATTTTCCTGAGGAAAATGAAATCCATGAAAGTAAAAAGAGGAAGCCAACAGATGTGCTAGAGACCAGTTCTACAAACTCAAATTCTGCAGTTTTTGAGAGTGGCAAAATGAAAAATTGTTCCAGAAGAAGTAAGAGAGTAAAAAGCAGTGAAACAGATGTGGACAATTCAAAAGAAGTGGCTCATGTCAGAGCCAAAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAGTTAAGGTGCTTACAGAACATTGTCCCAGGATGCTACAAGACTATGGGTATGGCAGTAATGTTGGACGAGATCATAAACTATGTCCAATCCTTGCAGCATCAAGTGGAGTTCCTCTCCATGAATCTTACTGCAGCAAGCAACTTCTATGACTTCAATTCAGAGACAGATGCTTTGGAAACATTGCAGAGAGCAATGGCAGCTGAGGCAAAAGAGTTATCCAAACATGGGAGAGAAGACTGCGTAGGAATTTCTTGTTTTCAACCAACCTGGCCCTTCTGA 810 0.4148 MAEFTTYLQALRSPFRFLDIDPSMELINQSTGMSPRVLDNSNLNFQSFVPFSCDTSLGFPEPQFEGKLEESFPSLVHQVNHNALPVSSPNFPEENEIHESKKRKPTDVLETSSTNSNSAVFESGKMKNCSRRSKRVKSSETDVDNSKEVAHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSMNLTAASNFYDFNSETDALETLQRAMAAEAKELSKHGREDCVGISCFQPTWPF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2105 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 224 IPR036638 GO:0046983
Alju13g2105 269 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Alju13g2105 269 SMART finulus 164 214 IPR011598 GO:0046983
Alju13g2105 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 235 IPR024097 GO:0006355
Alju13g2105 269 MobiDBLite consensus disorder prediction 83 164 - -
Alju13g2105 269 MobiDBLite consensus disorder prediction 127 164 - -
Alju13g2105 269 MobiDBLite consensus disorder prediction 94 108 - -
Alju13g2105 269 Coils Coil 235 255 - -
Alju13g2105 269 MobiDBLite consensus disorder prediction 109 124 - -
Alju13g2105 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983
Alju13g2105 269 CDD bHLH_AtBPE_like 148 233 - -
Alju13g2105 269 FunFam transcription factor BEE 3-like 155 226 - -
Alju13g2105 269 Gene3D - 155 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2105 Alju-ChrAlju13 38033158 38034800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2105 38 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 49.799 3.17e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju13g2105 HLH 0.00017 No_clan