Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2101 ATGGCAACGCCGTTGACGGGACTGCAGCATTTGGAAGGCAGAGGAGGAGTGGCTTTGCTTTCCGATTCTGCGAACAAGGTCGATTCCTCCTCGCCGTCTACTTCGGCCGCCAATGGTGTCTTGAACTACTCTGAATTGGAGTTCCCAATCTTGATTTTCTTATTATTTCATAAGGCGATTCGAAAAGAGCTTGATGCTCTTCACCAGTTAGCTATGGCATTTGCAACAGGCAACCGCTCTGATATTCAGCCCCTCCTCCAGCGCTATCATTTTGTTAGATCCATTTATAGACAACACTCCAATGCTGAAGATGAGGTGATTTTTCCTGCTCTTGATATACGTGTGAAGAATGTTGCCCAGACATATTCTCTTGAACACAAAGGTGAAAGTAATCTCTTTGATCATCTATTCGAGCTGCTAAATTCTACCGTTCAGAATGATCAAAGTTTTTCAAAGGAGTTAGCATCTTGCACGGGAGCTCTGCAGACATCAGTTAATCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCATTGCTTATTGAGAAATTCTCAATAGACGAACAGGCATCTCTAGTTTGGCAGTTTCTGTGCAGCATTCCTGTCAATACAATGACAGAATTTCTTCCCTGGCTTTCAACATCTATATCGCCGGATGAATCTAGAAATCTGAAGAAGTGCTTAAGCAAGATAGTACCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCATTTGGATGGATGACAGAGGTGGTGTTAACACAATTGAAAGTTTTGCACATCATTCTCATATTCGGTGTAGTTCTAGCCCATTAACCCATCTGATTGGGAAAGCAAACTGTGCTTGTGATTCTGCAGCAACTGGAGAAAAGAAACTTTCTGAATCTATTCTGGATGTTTCTGATGCCACTGGAACACATCCTATTGATGAAATATTGCTCTGGCATAATGCGATAAAAAAAGAGTTGAGAGAAATAGCGGGGGAAACCAGAAAGATACAACTTTCCGGAAATTTTACTAATTGGTCAGCTTTTAATGAAAGGTTGCGGTTTATTGCTGAAGTTTGTGTATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCTGCTGTAGATGGAAAACTTTCTTTCTTCCAGGAGCATACTGAAGAAGAAAGCCAATTTAATAACTTCCGGCGATTGATTGAAGGTATTCAGAGTGAAGCAGCAACATCCAATTTAGAAGCTGATTTTTATTCCAAGTTATGCTCATGTGCTGATCATATAATGGAAACCATACAGAAGCATTTCTGCAAAGAAGAAGTTCAGGTTCTTCCACTTGCTCGGGAGTTCAGCTTCAAAAAACAACGCGAACTTTTGTTCCAAAGCTTGTGTATGATGCCTCTAAAATTGATTGAACGTGTCCTACCCTGGTTGGTAGGATCATTAACTGAAGATGAAGCAAAGATGTTTTTGAAAAACATGCGATTGGCAGCTCCCCCAAAAGATTCTGCTTTAGTCATTCTCTTCTGTGGTTGGATTTGCAAGGCTCGTAAGGGGGGTATGTGCTTGTTTGCAAGTGTATCAGGTTGCTGTCCTGCTAAAAATCTTACTGATATTGAAGAAAATATTTTCCAGTCATCCTGTGCTTGTGCTTCTGCATTATCTGAAAATGGTTGCTCAGCATCAGCTGAATCAGATGGGAACAAAAGACCATTCAAGCAAAACATATTGGAGTTCTGCAAGAATGGAGATATCCCTCAAACTTCAGAAACTGAAAGTATCCAAAAGCAATATTGTAGTGCTCAGTCTTGTTATGTGCCGGGTTTAGGAGTAAGCAGTAATAATCTGGGCCTGAGTTCTCATTCCACTACCAAGTCCATACGCTCCTTATCTTTCAGCTCTTCTCCCCCGTCTCTTAATTCCAGTCTTTTCATATGGGAAACCGATGACAACTCTTGTGATGCTAGCTCTTCAGAACGACCAATTGACACTATTTTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGATATTGAATCTGGAAAGCTTAGTGATGGTGACAAGAGAATTCTTCATCAATTTACTGGAAGATTTCGCCTTTTATGGGGTTTACAAAGAGCTCACAGTAATGCTGAAGATGACGTAGTTTTTCCAGCATTGGAATCCAAAGAGGCACTTCATAACGTGAGTCATTCATACATGCTCGATCATAGGCAGGAAGAAAAATTATTCAAGGATATATCCCTTGTTCTTTCTGAGCTTTCTGTTCTTCATGAAAGTTTGCTGACACCCAATGTGTCACAGGATATGAGTAATTTTGAAACTTCTGATGCCACTGTGAGTGATAATATAGGAAAATATAATGAATTAGCAACTAAACTTCAAGGGATGTGCAAATCCATAAGGGTGACCCTGGATCAGCATATTTACAGAGAAGAACGTGAGCTTTGGCCATTGTTTTGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTTGGTCGGATAATTGGAACTACCGGTGCTGAAGTGCTCCAGTCAATGTTACCATGGGTAACTTCCGCACTGACTCCGGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCTACCAAGAACACTATGTTCAACGAATGGCTTAGTGAATGCTGGAAAGAAAGTCCATGTAAAACATCAGAGCATAGGACGTCCCAAAGAGATACTGAATATCAAGAAAACTTGGACCTGAATGATCAGATTTTTAAGCCAGGTTGGAAAGATATATTTCGGATGAATCAGAGCGAGCTTGAGTCAGAGATACGGAAGGTATATCAGGATTCTACCCTTGACCCAAGGAGAAAGGCATATCTTGTGCAAAATCTATTGACCAGTCGCTGGATTGCTTCCCAGCAGAAGTTACCCAAAGCTGTAGCTGGAGAATCTTCTAACGGCGAACAAATGGAAGGAGGATTGCCATCATTTCGGGACCTGGGGAAAAATGAATTTGGATGTGAGCATTACAAGAGAAACTGCAAACTTCGAGCTGCATGTTGTGGCAAGCTATTTACATGCAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGTCCTGCCTGAATATACAAGCAGTTGGGCCCATATGCATGACCCCTTCATGTTATGGACTTGCAATGGCAAAATATTATTGCAACATCTGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATGTATGCCGTGTTGGGAGAGGGCTTGGAATTGATTATTTTCATTGTATGAAATGCAATTGCTGTCTGGGGATTAAATCAGAATCTCACAAATGCTTGGAGAAAAGTTTGGAAGTGAACTGTCCAATTTGTTGTGACTTCTTATTCACATCCAGTGCTCCAGTCAGAGCTCTACCTTGTGGCCATTATATGCATTCAGCTTGCTTTCAGGCGTACACTTGTAGTCACTACACATGTCCAATTTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTCGATGCTTTGTTGGCTGCTGAGGTGCTCCCTGAAGAGTACAAGGACCGGTATCAGGATATACTGTGCAATGATTGTGATCGAAAGGGCTCTTCACGCTTCCACTGGTTGTATCACAAATGTGGTTTTTGTGGCTCATACAATACCCGTGTAATCAAGTCTCAGGCAACAACAAATTCCATCTGCTGCTAG 3723 0.4104 MATPLTGLQHLEGRGGVALLSDSANKVDSSSPSTSAANGVLNYSELEFPILIFLLFHKAIRKELDALHQLAMAFATGNRSDIQPLLQRYHFVRSIYRQHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSTVQNDQSFSKELASCTGALQTSVNQHMAKEEEQVFPLLIEKFSIDEQASLVWQFLCSIPVNTMTEFLPWLSTSISPDESRNLKKCLSKIVPEEKLLQKVIFIWMDDRGGVNTIESFAHHSHIRCSSSPLTHLIGKANCACDSAATGEKKLSESILDVSDATGTHPIDEILLWHNAIKKELREIAGETRKIQLSGNFTNWSAFNERLRFIAEVCVFHSIAEDKVIFPAVDGKLSFFQEHTEEESQFNNFRRLIEGIQSEAATSNLEADFYSKLCSCADHIMETIQKHFCKEEVQVLPLAREFSFKKQRELLFQSLCMMPLKLIERVLPWLVGSLTEDEAKMFLKNMRLAAPPKDSALVILFCGWICKARKGGMCLFASVSGCCPAKNLTDIEENIFQSSCACASALSENGCSASAESDGNKRPFKQNILEFCKNGDIPQTSETESIQKQYCSAQSCYVPGLGVSSNNLGLSSHSTTKSIRSLSFSSSPPSLNSSLFIWETDDNSCDASSSERPIDTIFKFHKAIRKDLEYLDIESGKLSDGDKRILHQFTGRFRLLWGLQRAHSNAEDDVVFPALESKEALHNVSHSYMLDHRQEEKLFKDISLVLSELSVLHESLLTPNVSQDMSNFETSDATVSDNIGKYNELATKLQGMCKSIRVTLDQHIYREERELWPLFWRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTPDEQNKMMDTWKQATKNTMFNEWLSECWKESPCKTSEHRTSQRDTEYQENLDLNDQIFKPGWKDIFRMNQSELESEIRKVYQDSTLDPRRKAYLVQNLLTSRWIASQQKLPKAVAGESSNGEQMEGGLPSFRDLGKNEFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMSCLNIQAVGPICMTPSCYGLAMAKYYCNICKFFDDERNVYHCPFCNVCRVGRGLGIDYFHCMKCNCCLGIKSESHKCLEKSLEVNCPICCDFLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEVLPEEYKDRYQDILCNDCDRKGSSRFHWLYHKCGFCGSYNTRVIKSQATTNSICC 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2101 1240 FunFam Zinc finger protein BRUTUS 649 879 - -
Alju13g2101 1240 Gene3D nmb1532 protein domain like 648 879 - -
Alju13g2101 1240 Gene3D - 1194 1236 - -
Alju13g2101 1240 ProSiteProfiles Zinc finger CHY-type profile. 987 1056 IPR008913 GO:0008270
Alju13g2101 1240 CDD Hr-like 309 438 - -
Alju13g2101 1240 Pfam Zinc-ribbon 1170 1227 IPR039512 -
Alju13g2101 1240 SUPERFAMILY CHY zinc finger-like 989 1050 IPR037274 GO:0008270
Alju13g2101 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1167 IPR013083 -
Alju13g2101 1240 ProSiteProfiles Zinc finger RING-type profile. 1123 1165 IPR001841 -
Alju13g2101 1240 SMART ring_2 1123 1164 IPR001841 -
Alju13g2101 1240 Pfam CHY zinc finger 994 1069 IPR008913 GO:0008270
Alju13g2101 1240 ProSiteProfiles Zinc finger CTCHY-type profile. 1059 1122 IPR017921 -
Alju13g2101 1240 SUPERFAMILY RING/U-box 1121 1168 - -
Alju13g2101 1240 Gene3D nmb1532 protein domain like 49 198 - -
Alju13g2101 1240 Gene3D nmb1532 protein domain like 308 454 - -
Alju13g2101 1240 CDD Hr-like 656 814 - -
Alju13g2101 1240 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 697 1233 - -
Alju13g2101 1240 Pfam Hemerythrin HHE cation binding domain 306 440 IPR012312 -
Alju13g2101 1240 Pfam Hemerythrin HHE cation binding domain 53 180 IPR012312 -
Alju13g2101 1240 Pfam Hemerythrin HHE cation binding domain 654 815 IPR012312 -
Alju13g2101 1240 CDD RING-H2_Pirh2-like 1122 1165 - -
Alju13g2101 1240 CDD Hr-like 52 178 - -
Alju13g2101 1240 Pfam Ring finger domain 1122 1164 IPR001841 -
Alju13g2101 1240 FunFam Zinc finger protein-related isoform 1 1118 1167 - -
Alju13g2101 1240 SUPERFAMILY Zinc hairpin stack 1060 1116 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2101 Alju-ChrAlju13 37981104 37994016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2101 1 1233 C2H2 Transcription Factor Family AT3G18290 64.452 0.0 1615