Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2090 ATGCCTCGTGCAGCAGATGCTTCTGAATCACGGCACATCACCCAATTCGCGCATCTCATTTCCCAAACAGACCCCAACCCACAATTCCCTTCCCTGCCTCAATCCACTCGCTCCCAACCCACCATTTCCTCTATCCTCTCTGCCCCCTCCCACGACACTTTCGATGAATCCCCACGGCCCAGCCTCAACACCAACAAGAAGAAGCCCAGTTTCTCCGCCGCAACCTTCAGAGGATTCGGATGCACTGCGGGCGCCTCGCGCCAGATATCGCTTCCCGCGGTCATTCGGACATCGGCTGATTGGCAACACACCAAAGCCAGAAAGAAGGAGCACAAGAGGGATGGTGCCGACAAATGTGTGAGCGGTCAAGGCGTTCTTGATGGTTCAAATCCTGGTTCCGTTAGTTGTGTTGCTTTTCAAGATGCTTGGTGTGGCCCTGGAATTGGGTTTGCGGCCGATGTTGCTGCCCCTGCGGATTGCGTTGTCGTCAGGAAGAATGGCCCTACCAGACGGAAGACTGATTTGGAGAAGGTGACCCACAGCCACGGGGAGCGATTAACGAGTCGCCCTGAGTCTTTTGGTACTGCTGGATCCTATCGCCATGTTCCACTTCCACTTCCTTCCTCTCGTAACTTTGCTGGGATGACGCTGCTTCAAGGAACTATGCTGATGGGGGCAAGATTGAATTCTCGCGACCACTTTAGAGACTGGAGACTTGATATTGATAACATGTCTTATGAGCAATTGCTGGAGCTTGGTGAGAGAATTGGCTATGTGAACACTGGGCTTAAAGAAGATGAGATAGGGAGTTACATTAGGAAATTCAAGCTTTCCAAGTTCAATGAGACTTCAAAACGTCAAGTTGACAACAAATGCAGCATTTGTCAGGAAGAATACGAAGCTGATGATGAGGTGGGAAGGCTAAGTTGTAAACACGACTATCACTTTCAGTGTCTAAGGCAATGGCTCGCACAGAAAAATTGCTGCCCCGTGTGTAAGCAAGAAGTTGCGAGTCGTCACTCCGGGGCCAAATCCTGA 1038 0.5096 MPRAADASESRHITQFAHLISQTDPNPQFPSLPQSTRSQPTISSILSAPSHDTFDESPRPSLNTNKKKPSFSAATFRGFGCTAGASRQISLPAVIRTSADWQHTKARKKEHKRDGADKCVSGQGVLDGSNPGSVSCVAFQDAWCGPGIGFAADVAAPADCVVVRKNGPTRRKTDLEKVTHSHGERLTSRPESFGTAGSYRHVPLPLPSSRNFAGMTLLQGTMLMGARLNSRDHFRDWRLDIDNMSYEQLLELGERIGYVNTGLKEDEIGSYIRKFKLSKFNETSKRQVDNKCSICQEEYEADDEVGRLSCKHDYHFQCLRQWLAQKNCCPVCKQEVASRHSGAKS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2090 345 MobiDBLite consensus disorder prediction 21 69 - -
Alju13g2090 345 SMART ring_2 292 332 IPR001841 -
Alju13g2090 345 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Alju13g2090 345 Pfam Ring finger domain 290 333 IPR001841 -
Alju13g2090 345 FunFam E3 ubiquitin-protein ligase rnf12-A 259 338 - -
Alju13g2090 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 342 IPR013083 -
Alju13g2090 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 22 337 IPR045191 GO:0061630
Alju13g2090 345 MobiDBLite consensus disorder prediction 173 187 - -
Alju13g2090 345 MobiDBLite consensus disorder prediction 173 194 - -
Alju13g2090 345 SUPERFAMILY RING/U-box 291 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2090 Alju-ChrAlju13 37921528 37923897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2090 64 247 C3H Transcription Factor Family AT1G73760 38.326 1.85e-33 123