Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2075 ATGGGTATCAAGGATCTTCTCCGATTCATGAAGCCCTATATCGAACCCATTCACATCAACAAATATGCCGGACAACGCGTGGGTATTGATGCTTATTCATGGCTTCATAAGGGAGCTTATTCCTGTAGTATGGAGCTTTGTCTCGATTCTGATACTGAAAAGAAGTTCCAATACATAGAGTACTTTATGCATAGAATCAAGCTGCTTCGCTACTATAAGATAACGCCGGTTGTTGTTTTTGATGGCGGCAACATTCCTTGCAAGGCAGCAACGGAGGAAGATAGGAAGAGAAAGCGAAATGCTAATCGCGATTTGGCAATGGCTAAGCTCAAAGAGGGAAAAATCAATGCAGCCTCAGAGTTATTTCAGAGAGCAGTGAACGTCACTCCCATTATGGCTTATCAACTGATTCAGATTTTGAGATCAGAGAACATTGAGTTTGTTGTAGCCCCATATGAAGCAGATGCTCAGTTAGCATGCTTGTCCAAGATTAAAACAGAAAAGAGTGGTGTTGTAGCTGTGATCACTGAGGATAGTGATCTAATTGCCTACGGTTGTCCAGCTATTGTCTTTAAGATGGACCGATACGGGAATGGTGAAAGCATAGAGTTAGACAAGGTTTTTAAAGCTGACACTTGTAAACCATCCTTCCGAAATTTTGATATGGCACTTTTCACAGGTATGTCTGTCTTGGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCGCGAGCTCATGCCTTAGTTTCCAAGTATCGGAATTTAGATCGTGTGTTATCTGTTCTTAAGATGGAGAAGGGCAATCAAGTGCCAGAAGATTACGCCAAATCCTTCAAAGAGGCAATTGCAGTCTTCCAGCATGCTCGAATATATGATCCCACTGCTAAGGAGCTCAAGCACCTCACGCCACTTCCCCAAAACCTTCTTCAGTCCTTTGATGGAAATCTCGATTTTTTGGGACCAGAAATTCCTCCAGAAATAGTTACCGCAATAGCAGAAGGCAACTTAAATCCCTCAACTAAGAAAGTCTTTGATAAGCTCGAATGTTCCGGACTCCCTTTGGGCCCGATTATCCTCAAGAGCAATCTCCAACACCGGAAAGTCCAAGTTTCTGCAGTATCTACACAGAAACGCTCCTTCAAAGTCTTTGACTCCCATGATGCCAGAGAAAACAGTGCAGTGACAATGTCGAATCTGGTCGCGAACAAGGACAAGTATTCTGGTGAAGCATTGGCACTTCAGAAACTTGTTAGACCGTTGGTAACTTGTGGAAACGCAGAAAAGGAAAATATTCCTGATGAAATTCCTTTAAAGGTTCCTGACAACAACCCATTCAGGATAAAACCTGAGGAAATTTGTTTATTTCAGAGGGAAAACCCCGATGAACAAGTTCTTGTTACCAGAAGTGAGGAATATATGGACGTGTGCATGAATCCTGATAGCTTTCCGGAAGAGAGGTCTGAAAATCTCTCGAGAAAAAGGGATTTTCAGAGCATTTGCTCAGATCAAGCAGAAGCTTGCGATGACCAGATTTCAGAGGTGACGGTGATTGAAGCGGAGGATCCAGATATGTTATGTTGGAACGTGAAATCCCAAGAGAGTATAAATTCTATGACAGTAAAACGCATTGATTTGAAAAGAAGAGGTGCAAGTGAAAAGAAATCCAAGAAAAGCAGTGGCAAGGAAACGGGGAGTAAGAACAGCAGTATCTTAAATTTCTTTTCTCGAGTGTAA 1743 0.4228 MGIKDLLRFMKPYIEPIHINKYAGQRVGIDAYSWLHKGAYSCSMELCLDSDTEKKFQYIEYFMHRIKLLRYYKITPVVVFDGGNIPCKAATEEDRKRKRNANRDLAMAKLKEGKINAASELFQRAVNVTPIMAYQLIQILRSENIEFVVAPYEADAQLACLSKIKTEKSGVVAVITEDSDLIAYGCPAIVFKMDRYGNGESIELDKVFKADTCKPSFRNFDMALFTGMSVLAGCDFLPSVPGIGIARAHALVSKYRNLDRVLSVLKMEKGNQVPEDYAKSFKEAIAVFQHARIYDPTAKELKHLTPLPQNLLQSFDGNLDFLGPEIPPEIVTAIAEGNLNPSTKKVFDKLECSGLPLGPIILKSNLQHRKVQVSAVSTQKRSFKVFDSHDARENSAVTMSNLVANKDKYSGEALALQKLVRPLVTCGNAEKENIPDEIPLKVPDNNPFRIKPEEICLFQRENPDEQVLVTRSEEYMDVCMNPDSFPEERSENLSRKRDFQSICSDQAEACDDQISEVTVIEAEDPDMLCWNVKSQESINSMTVKRIDLKRRGASEKKSKKSSGKETGSKNSSILNFFSRV 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2075 580 MobiDBLite consensus disorder prediction 547 580 - -
Alju13g2075 580 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Alju13g2075 580 Gene3D - 1 213 - -
Alju13g2075 580 SMART xpgn3 1 102 IPR006085 GO:0004518
Alju13g2075 580 FunFam Exonuclease 1, putative 1 214 - -
Alju13g2075 580 FunFam exonuclease 1 218 291 - -
Alju13g2075 580 SMART xpgineu 141 210 IPR006086 GO:0004518
Alju13g2075 580 CDD H3TH_FEN1-like 225 295 - -
Alju13g2075 580 MobiDBLite consensus disorder prediction 565 580 - -
Alju13g2075 580 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Alju13g2075 580 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 522 IPR006084 -
Alju13g2075 580 MobiDBLite consensus disorder prediction 547 564 - -
Alju13g2075 580 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 221 349 IPR036279 -
Alju13g2075 580 Gene3D - 218 291 - -
Alju13g2075 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Alju13g2075 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Alju13g2075 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Alju13g2075 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Alju13g2075 580 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Alju13g2075 580 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Alju13g2075 580 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2075 Alju-ChrAlju13 37821286 37825284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2075 1 313 Core DNA Replication Machinery Family AT5G26680 25.228 5.38e-13 69.3