Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g2012 ATGGAGAATGTTGGAGGAAGCTCGTCTTCGAATAACAACGACAACAGTGGAATCAAGGAGCAGGACAGGTTGTTGCCGATAGCGAATGTTGGTCGAATCATGAAGCAGATACTGCCTCAGAACGCCAAGATATCCAAGGAGGCCAAGGAGACCATGCAAGAATGCGTGTCGGAGTTCATAAGCTTCGTGACGAGCGAGGCGTCGGACAAGTGCCGCAAGGAGAGGAGGAAGACGGTGAATGGGGATGACATATGCTGGGCCTTGGCCACGCTTGGTTTTGATGACTATGCTGACCCACTGAGGAGGTATCTGCACAGATTTAGAGAGTTAGAAGTTGACAGAGCTAATCATGACAGAGCAAATACTGATAGCCCTCATGACAGGGAAGACCTCTATCAAATTCCCTCCACAGGAGTCAGGCAGTCATAG 429 0.4988 MENVGGSSSSNNNDNSGIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICWALATLGFDDYADPLRRYLHRFRELEVDRANHDRANTDSPHDREDLYQIPSTGVRQS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g2012 142 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 117 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju13g2012 142 MobiDBLite consensus disorder prediction 1 20 - -
Alju13g2012 142 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Alju13g2012 142 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Alju13g2012 142 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Alju13g2012 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Alju13g2012 142 SUPERFAMILY Histone-fold 21 133 IPR009072 GO:0046982
Alju13g2012 142 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Alju13g2012 142 FunFam Nuclear transcription factor Y subunit B-3 13 136 - -
Alju13g2012 142 MobiDBLite consensus disorder prediction 117 142 - -
Alju13g2012 142 Gene3D Histone, subunit A 11 141 IPR009072 GO:0046982
Alju13g2012 142 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g2012 Alju-ChrAlju13 37367571 37367999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g2012 3 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.923 1.98e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju13g2012 CBFD_NFYB_HMF 1.4e-27 CL0012