Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1998 ATGTTGCAGAAGCAGAGGGAGCGGAAGGGAAAGTCTAATGAATTGCTGATTTTTTCATCCGTGATATCCATCAGCTTCAGCCCCTCCTCCTCCTGCCTTATTTATACTTGTCCACAGTTTGTTTTCCCTGCAACTTCAGTTTCAAGTTCAACACAGATTCATATATCAGAAATGGGACTGTCCAACTTCCCCGCCGCAGCAGAGGGGCTGCTTCCGGTGCTGGTCATGAACACCGTCGTGTCAGTGGCTATGTTGAAGAACATGTTGAGGTCTCTTCTGCAAATGGTTGCCTGGAACCCAATAGACATGAATGTGGAGCGAGAGGGTGATGATGACGAGCAGAGAAGTGTTTCGAGGAGGAGGGTGTCCATTACGCAGTACAAGTGCATGAGTGACGGCGGAGCAACGTGGCGCATGGCGGAGTGCTGTGTGTGTCTGTGTGGTTTCCAAGGCAGCCAAGAGGTGAGTGTATTGTCTTGCAAGCATTTCTTCCACAGAGCTTGCTTGGACAGGTGGTTCCTCAACAGACACACCACCTGTCCTCTCTGCCGTTCCACTTCTTAA 564 0.5018 MLQKQRERKGKSNELLIFSSVISISFSPSSSCLIYTCPQFVFPATSVSSSTQIHISEMGLSNFPAAAEGLLPVLVMNTVVSVAMLKNMLRSLLQMVAWNPIDMNVEREGDDDEQRSVSRRRVSITQYKCMSDGGATWRMAECCVCLCGFQGSQEVSVLSCKHFFHRACLDRWFLNRHTTCPLCRSTS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1998 187 SMART ring_2 142 183 IPR001841 -
Alju13g1998 187 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Alju13g1998 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 187 IPR013083 -
Alju13g1998 187 Pfam Ring finger domain 141 184 IPR001841 -
Alju13g1998 187 CDD RING-H2 142 184 - -
Alju13g1998 187 SUPERFAMILY RING/U-box 141 186 - -
Alju13g1998 187 PANTHER - 58 186 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1998 Alju-ChrAlju13 37281204 37283513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1998 58 185 C3H Transcription Factor Family AT2G04240 31.373 4.92e-19 78.2