Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1982 ATGGAACGGTATGATATAATCAAAGATATTGGGTCAGGCAACTTTGGGGTGGCGAAGCTGGTGAGGGATAAACGGAGTGGTGACTTGTATGCTATCAAGTTTATTGAGAGAGGCATAAAGATTGATGAGCATGTGCAAAGGGAGATCATAAACCATAGATCCTTGAAGCATCCCAACATCATTCGATTCAAAGAGGTGTTGCTCACTCCGACACATCTTGCCATAGTGATGGAATATGCCGCTGGAGGAGAACTCTTTGAAAGAATATGTAATGCGGGTAGATTCAGTGAAGATGAGGCAAGGTATTTCTTTCAGCAGTTGATTTCTGGAGTCAGCTATTGTCATTCAATGGTACAATTATTGTCCAATCTATATGTAATACCAATTTCTATTGAACGTATCAATTTGAGCCTACCTACTTTGGCTAAATGGGATATCTATCTCCTTCTCATGCAGGAAATTTGCCACAGAGATCTTAAACTAGAAAACACACTCTTAGATGGAAGCACAGCACCACGACTAAAAGTTTGCGACTTTGGCTACTCAAAGTCATCAGTTCTGCACTCTCAGCCCAAATCTACTGTAGGAACCCCTGCTTACATTGCACCAGAGGTTTTGTCACGAAGGGAATATGATGGAAAGGTTGCAGATGTTTGGTCTTGTGGTGTGACCTTATATGTCATGCTGGTTGGTGCTTATCCTTTTGAAGATCATGAAGATCCTAAAAACTTCAGAAAAACACTTCAGCGAATTCTCAGCGTCCACTATTCTATACCAGACTATGTTCGCGTCTCAAAAGAGTGTAAGCACCTTCTATCTAGAATATTCGTGGCCGACCCAGAGAAGAGAATAATGATCCCAGAAATCAAAATGCACCCGTGGTTCCTGAAGAACTTGCCACTGGAATTTATGGACGAAGGGAGGCAAAGTGGGATACAAGAAGATTTATATGTGAACGATTCATGCGGGAGGCAGAGCATCGAAGAGATATCGAGTATAATTCAAGAAGCTAGAAAAGCAGGGGATCAAGGCCAAAAAGTTGGCGGGCATTTCGTTGGAATTGGAAGTATGGATCTTTATGAGATGGATACTGATGCTGACATTGATGATTTCGAGACAAGTGGTGATTTTGTCTGTGCTCTAACCGGCCGTAACCGAGATCTAGCTTCCTCTGTTAGGCAGTTCCAAAAGCAGAGCATGGGCGGGAGCGGGCGAGGAGGCAGGTCTCGCACTCAAAGAAAGCACTTCCAGCAGAGCAGAGAGAACGTCTGGAAGCATCCAAAACCTCCTCCTCCTTCCCAAAATGGATACGATAATCCTACTTGGACGCCCTTCGCCACTCAGAATTCTGCTTTTAATGAGTATTACAAGGAGCAAAGGACAGTGGCCTCTGAAGAGTGGGACACATTTGTGGAAGTTCTCAGAACTCCATTGCCTGCAACCTTCCGAATCAACTCCAGTAGCCAATTTTCTGCAGACATTCGATCTCAACTGGAGAATGATTTCGTGCAATTTCTTCAATCTGAGGTTGTTGAAGGCAGCGAGAGAGAGGCTATTAGACCATTGTTGTGGTACCCTGAAAATCTTGCGTGGCATACAAATTTTTCCCGGATGCAGCTGAGGAAGAACCAAACACTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATCGGAAATATTACAAGACAAGAAGCCGTCAGCATGGTACCCCCCCTCTTTTTGGATGTACATTCAAATCATTTTGTACTCGATATGTGCGCTGCGCCAGGTTCAAAAACATTTCAACTACTTGAGATTATACACCAATCATGTGAAGTAGGGTCACTGCCTTATGGAATGGTAATGGCAAATGACCTTGATGTCCAAAGGTGTAACCTTCTCATCCACCAAACAAAACGAATGTGTACAGCCAACTTAATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCGTTTAAACAGAAAGCATGATACCATGGATTCAGATCAGCATATTAGCCAACTTTTATTTGATCGTGTTTTGTGTGATGTCCCATGTAGTGGAGATGGTACCCTTCGTAAGGCCCCTGATCTTTGGAGGAAATGGAACACAGGAATGGGTCATGGGCTTCATAACCTACAAGTTCTAATAGCTTTGCGAGGTGCATCTTTGCTTAAAGTTGGTGGAAGAATGGTTTATTCAACCTGCTCAATGAACCCTATAGAGAATGAAGCTGTGGTTGCAGAGATTCTGCGGAGATGTGGAGGGTCTGTTGAACTTGTTGATGTGTCTCATGAGCTCCCACAACTTATTCGCCGGCCAGGTCTCAGGAGATGGAAGGTACTTGACAAGGGCACATGGCTGGGGTCTTACAAAGATGTTCCCAAGTCACGCAGAAGTGTAGTTCATCCCAGCATGTTCCCTTCTGGCAGAAGCTTTCAGGATCTTTTTGATAGCAGTCATAATGTAGGCATGCAAAATGACATTAATGATGGAGATTCTGAAGATGCTCTTCAGGCAACAGAGAATTCCATGACAAATAATTTTACTGAGGAAGTTTCTAATTTCCCTCTAGAGCGTTGTATGAGGATTGTGCCTCATGATCAAAACACTGGAGCCTTCTTTATTGCTGTACTTCAAAAAGTTTCTCCTCTGCCAGAAATTCGGGAAAAACTTAAAAAAGGAATCTCTAAGAAGCAAGTAAAACCAGCAAACCCGGATATTGAGGATAAGGAGGTGTTGCAGGTTGATTCATTAGAAAATACAACCAAGGAAGTTTTGGAAGCAGTTTCAGTGGCTGATGTAAGTGAAATTGAATCCAACATTGTAGATTTGGAAGTTAGGCCTTCTGTTTCCCATGAAGAATGGAATTCAGGGGACGAAGCCCGAGAGACTGAAAATGCAGAAAGCATAGCTAGGATGACTCAGGGAAAAAGAAAGCTGCAGATTCAAGGCAAGTGGAGAGGCGTGGACCCTGTTATCTTCTTCAAAGATGATGTTATTATTAACAGCATAAAGGCATTCTACGGTATTGATGAGCAGTTTCTATTCAATGGTCACCTAATTTCAAGAAACAATGATCCAAACCACGTGAAGAGGATTTACTATGTTTCCAAATCAGTCAAGGATGTTCTTGAACTAAATTTCTCAGTTGGGCAGCAGCTAAAAATTGCATCAGTTGGTCTGAAGATGTTTGAAAGACAATCATCACGGGAAGGTAGCTCTGCGCCGTGCTCTTTCCGGATCTCATCTGAAGGACTGCCCGTTATTCTCCCTTATATCACCAAGCAGATTCTACATGCATCTCCTGTAGACTTTAAGCGTCTTCTGCAGAATAGAGCTGTAAGATTTGCAGATTTTGTTGATACTGAGTTTGGGGAAAAGGCAGCAAACCTTAAGCTAGGATGTTGTGTGGTGGTTTTGGGTAAAGGGAACAGAGCTGATTTGGAGTCCTTCCAGGTGGACGAGTCAACCATAGCCATTGGGTGCTGGAAGGGTAGGGCCAGTCTGACAGTGATGGTTACTGAAACCGATTGTCAAGAACTGCTTGAGAGGCTCCTTGCACGTCTAGATGCAGAATATGGCTCCTCTGTGCTCGTAGACAAACAGTCCAATAATGTAGGGGATGAAGGAGAGGGCTTGAAAGGCAAAACTACTGTGACCAATTAA 3660 0.4322 MERYDIIKDIGSGNFGVAKLVRDKRSGDLYAIKFIERGIKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMVQLLSNLYVIPISIERINLSLPTLAKWDIYLLLMQEICHRDLKLENTLLDGSTAPRLKVCDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDHEDPKNFRKTLQRILSVHYSIPDYVRVSKECKHLLSRIFVADPEKRIMIPEIKMHPWFLKNLPLEFMDEGRQSGIQEDLYVNDSCGRQSIEEISSIIQEARKAGDQGQKVGGHFVGIGSMDLYEMDTDADIDDFETSGDFVCALTGRNRDLASSVRQFQKQSMGGSGRGGRSRTQRKHFQQSRENVWKHPKPPPPSQNGYDNPTWTPFATQNSAFNEYYKEQRTVASEEWDTFVEVLRTPLPATFRINSSSQFSADIRSQLENDFVQFLQSEVVEGSEREAIRPLLWYPENLAWHTNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSNHFVLDMCAAPGSKTFQLLEIIHQSCEVGSLPYGMVMANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRKHDTMDSDQHISQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHNLQVLIALRGASLLKVGGRMVYSTCSMNPIENEAVVAEILRRCGGSVELVDVSHELPQLIRRPGLRRWKVLDKGTWLGSYKDVPKSRRSVVHPSMFPSGRSFQDLFDSSHNVGMQNDINDGDSEDALQATENSMTNNFTEEVSNFPLERCMRIVPHDQNTGAFFIAVLQKVSPLPEIREKLKKGISKKQVKPANPDIEDKEVLQVDSLENTTKEVLEAVSVADVSEIESNIVDLEVRPSVSHEEWNSGDEARETENAESIARMTQGKRKLQIQGKWRGVDPVIFFKDDVIINSIKAFYGIDEQFLFNGHLISRNNDPNHVKRIYYVSKSVKDVLELNFSVGQQLKIASVGLKMFERQSSREGSSAPCSFRISSEGLPVILPYITKQILHASPVDFKRLLQNRAVRFADFVDTEFGEKAANLKLGCCVVVLGKGNRADLESFQVDESTIAIGCWKGRASLTVMVTETDCQELLERLLARLDAEYGSSVLVDKQSNNVGDEGEGLKGKTTVTN 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1982 1219 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Alju13g1982 1219 MobiDBLite consensus disorder prediction 392 406 - -
Alju13g1982 1219 FunFam Serine/threonine-protein kinase SRK2A 144 303 - -
Alju13g1982 1219 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Alju13g1982 1219 ProSiteProfiles Protein kinase domain profile. 4 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1982 1219 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 412 1189 IPR023267 GO:0001510
Alju13g1982 1219 MobiDBLite consensus disorder prediction 392 439 - -
Alju13g1982 1219 ProSitePatterns NOL1/NOP2/sun family signature. 674 685 IPR018314 GO:0003723|GO:0008168
Alju13g1982 1219 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 447 789 - -
Alju13g1982 1219 Gene3D Transferase(Phosphotransferase) domain 1 80 301 - -
Alju13g1982 1219 PRINTS RNA (C5-cytosine) methyltransferase signature 725 741 IPR023267 GO:0001510
Alju13g1982 1219 PRINTS RNA (C5-cytosine) methyltransferase signature 861 878 IPR023267 GO:0001510
Alju13g1982 1219 PRINTS RNA (C5-cytosine) methyltransferase signature 675 687 IPR023267 GO:0001510
Alju13g1982 1219 PRINTS RNA (C5-cytosine) methyltransferase signature 585 595 IPR023267 GO:0001510
Alju13g1982 1219 SMART serkin_6 4 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1982 1219 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 453 879 IPR029063 -
Alju13g1982 1219 Pfam Protein kinase domain 4 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1982 1219 Pfam Protein kinase domain 151 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1982 1219 CDD STKc_SnRK2 3 294 - -
Alju13g1982 1219 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 531 552 IPR023270 GO:0016428
Alju13g1982 1219 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 759 778 IPR023270 GO:0016428
Alju13g1982 1219 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 1052 1064 IPR023270 GO:0016428
Alju13g1982 1219 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 470 879 IPR001678 GO:0008168
Alju13g1982 1219 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Alju13g1982 1219 SUPERFAMILY Protein kinase-like (PK-like) 1 296 IPR011009 -
Alju13g1982 1219 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Alju13g1982 1219 Pfam 16S rRNA methyltransferase RsmB/F 575 760 IPR001678 GO:0008168
Alju13g1982 1219 Gene3D Vaccinia Virus protein VP39 445 797 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1982 Alju-ChrAlju13 37161527 37174081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1982 3 305 CBL-interacting serine-threonine protein kinases AT4G24400 37.179 3.19e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Alju13g1982 Methyltr_RsmB-F 3e-33 CL0063