Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1939 ATGAAAGCTCTCTCTGATTTCTTCTTTCATCTCTACGCAAAGACCATCGTCCTCTTGGTCTTCCTCCTCGTAGAACTCATCATCCTCGTCCGAAACCTCAAAACACACACACCTCCAATTACCATCTCCCAGTACCTCCAACTCATAGAAGAGAAAAGCCCAACCGTTTGTTTCACCAGAACACTGAACATGGCAGACCAACTAGAGTGCAGGGTTTGCTTATCTGAGCTTCACGAAGGCGACAAAGTTAGGACCTTGAAATGTAAACACACATTTCACCAGGAATGTTTGGACCGGTGGTTGCTTCAGTTTTGGGCTACTTGTCCTCTCTGTAGAAACAGAGTCCTCCCAGAAGATGTCGTCACCAATTATCGACAGCTTCGGGATCAGAGGGAATTGATCATCTATCCCTTCTGGGATTCCTCGGAAGATTATGAATGGGCTGGATCTCTGGAAATTCTGGAAATATTGAAGTTCCTATCAGTCCAGTTCATGTTGAAAATATCTCAGCAGAGGAAGATATTTGTAGACATATTACTCTGCAGATTTTCACGGGGTTTTATTCTCACAGCAGGAGTAGGGACTGGTCAGGCAATAGAAGAATTATGGGCAAACATCGCATTTCCAGAACTGCCGATCCATGTTGGTTTTCCAGAAAGGCAGAAAAAATACCTGGGTCACTACAACGAGGGTTTGTTTGTTGGTGCTGCTGGTTTTGCTTGGACTCAACGGCGGGCCATTGTGGAGGAGAAGGCAGTGGAGCTTTGGTGGTAG 774 0.4561 MKALSDFFFHLYAKTIVLLVFLLVELIILVRNLKTHTPPITISQYLQLIEEKSPTVCFTRTLNMADQLECRVCLSELHEGDKVRTLKCKHTFHQECLDRWLLQFWATCPLCRNRVLPEDVVTNYRQLRDQRELIIYPFWDSSEDYEWAGSLEILEILKFLSVQFMLKISQQRKIFVDILLCRFSRGFILTAGVGTGQAIEELWANIAFPELPIHVGFPERQKKYLGHYNEGLFVGAAGFAWTQRRAIVEEKAVELWW 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1939 257 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Alju13g1939 257 PANTHER - 1 131 - -
Alju13g1939 257 Pfam Ring finger domain 69 112 IPR001841 -
Alju13g1939 257 SUPERFAMILY RING/U-box 57 118 - -
Alju13g1939 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 119 IPR013083 -
Alju13g1939 257 SMART ring_2 70 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1939 Alju-ChrAlju13 36838567 36841389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1939 69 126 C3H Transcription Factor Family AT1G15100 50.000 5.18e-16 71.6