Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1937 ATGATAGCATCAACTCTGCTATCAATGGCCGGCGTCGGCGCCAGCGTTGCTGCAAGGTTGTCATGCAAAATCCGACAACTGGGTTATCCTGAATCCACTTCTTGTCCAAAATCTAGGAAGCATGTCAGCTGCTATGATGGAAAGGGGTATCGCTCACAGCAGCTCAAGTGTTTCTGGAGAATTCCCAGCAATATTAGTCCAACTAATAGAAATGCCAAAGCTGCATGTCTGTTTTTCTGTATTTTAATGGCGGATCACTCAGACCCTTCACCGCTGGTCTCTCCTCCGCCGATCACTGACCCTAACGAGATCGACCTTGAGGCCGGTCCAAGCAAACAAATTCAATGCCGAATCTGCCTCGAAACTGATGGTAGAGATTTCATAGCTCCTTGCAAATGCAAGGGCACATCAAAATATGTACATCGAGAGTGTTTGGATCATTGGCGAGCTGTTAAGGAGGGGTTTGCTTTTGCTCACTGCACAACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGTTGATAGGAAATGGCGAACCTTGAAGTTTCGATTCTTTGTTACCAGAGACATTTTGTTTATTTTTCTGGCCGTCCAGCTAGTCATTACTTCACTTGCTTATTTGGTTTATCTAATAGATGGTTACCAGCAGTACTGGCTTCGTCTTATATGGGGTTTTGAGAGTGAGCTTAGCTTTTATTATTTATGTGGAGCTTTATTGTTTTTTGCTTTGCTTGGCCTATCTGGGTGCTTCATTACTTGTTATGATCGGAGGGTGCGCAATGATTTGGCTCAGCCTTGTCGAGAATTATGCCTTTGTTGCTGTCACCCTGGAGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACCGCATGCTTTGAGAGTTGTGGAACTATGGCGACTGAATGTGGTGGTTGCTTGGGAGGTTCTGGGGAAGTAGGGTTGCCCTTGTTACTTATAATGGGATTGATTGTTCTAGGACTTTTTACTGTAATAGGGATATTTTACAGTGTATTGGTGGCTACCATGGTAGGACAACGGATATGGCAGCGACATTATCACATACTTGCAAAAAGGATGCTAACAAAGGAGTATGTGGTTGAGGATGTTGATGAGATGGCAGGGTCTGATTGGTTTCCCCCATCTCTGCCACCCGAGCATGTTCAGCAGCTGAAAACACTAGGCCTCCTATGA 1215 0.4519 MIASTLLSMAGVGASVAARLSCKIRQLGYPESTSCPKSRKHVSCYDGKGYRSQQLKCFWRIPSNISPTNRNAKAACLFFCILMADHSDPSPLVSPPPITDPNEIDLEAGPSKQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAVDRKWRTLKFRFFVTRDILFIFLAVQLVITSLAYLVYLIDGYQQYWLRLIWGFESELSFYYLCGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGVCADCHLPGTLCMWTDCTACFESCGTMATECGGCLGGSGEVGLPLLLIMGLIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDEMAGSDWFPPSLPPEHVQQLKTLGLL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1937 404 CDD RING_CH-C4HC3_MARCH 116 164 - -
Alju13g1937 404 Pfam RING-variant domain 116 163 IPR011016 GO:0008270
Alju13g1937 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 177 IPR013083 -
Alju13g1937 404 ProSiteProfiles Zinc finger RING-CH-type profile. 108 170 IPR011016 GO:0008270
Alju13g1937 404 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 101 403 - -
Alju13g1937 404 SMART ringv_2 115 164 IPR011016 GO:0008270
Alju13g1937 404 SUPERFAMILY RING/U-box 111 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1937 Alju-ChrAlju13 36820063 36826976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1937 83 404 C3H Transcription Factor Family AT2G22120 82.716 0.0 542