Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1924 ATGACAGGGAAGAGAAATAACCAAACCAGTCCTGCTGGAAGCCCAACTTCTGGGAACATCTCAGACAGCTCTTCCAAAGAACAAGACAGGTTCCTCCCCATCGCCAACGTTAGCCGTATCATGAAAAGGGCACTTCCAGCTAATGCCAAAATCTCCAAGGAAGCCAAAGAGAGAGTTCAAGAATGTGTCTCTGAGTTCATAAGCTTCATCACCGGTGAAGCATCCGACAAGTGCCAGAGAGAAAAGAGGAAGACAATCAACGGCGACGATCTTCTGTGGGCCATGACAACGTTGGGGTTCGAGAATTATGTTGGACCCTTGAAGGTGTACCTTAGTAACTACAGGGAAACAGAGGGAGACAAGAGTTGTGTTGGTACTAAACAAGAAGATCAAGCTCAGGCAGAAACTAATGATGGGGTCGCCGAAATCAACAGGTTGACTAATTCTGTGTCAGCAAAAGCAGATCTTGCTGGTTTCAACGGTGCGTTTTACTCTGTTATGTCTCAGGTCGCTCCAAAGAGCTTCGCAGAGATAGGAGGGTTCACTGGTTTCAGAGAGAACCCCATGAACATGGCTATTGCTCAGAGTGCTGTTCATAATGATGCTGATGGAAATCTAAGTTACAGGGTTGAGTTGTAG 639 0.4648 MTGKRNNQTSPAGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKERVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLSNYRETEGDKSCVGTKQEDQAQAETNDGVAEINRLTNSVSAKADLAGFNGAFYSVMSQVAPKSFAEIGGFTGFRENPMNMAIAQSAVHNDADGNLSYRVEL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1924 212 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
Alju13g1924 212 Gene3D Histone, subunit A 18 154 IPR009072 GO:0046982
Alju13g1924 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju13g1924 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Alju13g1924 212 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Alju13g1924 212 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Alju13g1924 212 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Alju13g1924 212 SUPERFAMILY Histone-fold 28 137 IPR009072 GO:0046982
Alju13g1924 212 MobiDBLite consensus disorder prediction 1 28 - -
Alju13g1924 212 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1924 Alju-ChrAlju13 36742123 36742761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1924 12 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.667 1.42e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju13g1924 CBFD_NFYB_HMF 9.1e-26 CL0012