LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju13g1903	ATGCTAAAACCAAGAGGCAGAGTTGGTTCATATATATATATTCGTATGTCAAAGGTGGCCAAGAAAGAAGGAGAACATAGAAGCAATCCCGTGACGTCATCTATGCCAATGATATTTCCAGATATAGACAGGGAGAGGGAGATGTCTGCCATGGTTTCAGCTTTGACCCAAGTTGTGTCCGGGGATGTGCCCTCTGATTATACGGCTTCTCATCAAGACTCAACGTACCTCAACATAGCTCAAGCTTCTGCCACACCATCTTCGTCTTCATTCTATGGTTCTAGTTCTGCTGCAACGACAAGTACGGAAGATGGCACATTCTCACAGAGAGGCTCATCCTCATCCCCTGCTGTTCCAACAAGTAAGCACCAATACTGTTTTATTCTTTATTGTCAGATTACATATATCTTGATGGGTCCCCGCATGCTTTTGAAATTTAAAAAAAAAAATTTGTTTATGGGGAATACAGACAGAGAAGGGAGGAGCGAAATGATGGAAATGAGAAATGCGGTGTATGAATACAGAGCAGAGAACAGGAGGGAACAGGGGAGAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCTGCAGAAATCAGAGATCCATTTAAAGCAGCGAGGGTGTGGTTAGGTACATTTGACACAGCTGAAGCCGCAGCCAGAGCATACGACGAAACTGCCCTGCGTTTTAGAGGCAACAAGGCTAAACTCAATTTCCCCGAAAATGTCACCTTGCGTTCCCCTCCCCCAAATCTTCACAGCTTGCAGATTGATCACATGGTTTCACATGTTCAACCATCCCTGACGCCACCGCCGCCTGCGTCCTCCTCCTCGCCGTTTTCCGCCTTTGCCTCCACCGTTACTCCACTTCCTTCGCTTTATCCTGAACAGACTCAGATGAGCGATTCTGAATATTTAGCAGCTTCATCGTTTTCTCCCGCCGGTTACACCTTTAATTCCGGATAA	975	0.4626	MLKPRGRVGSYIYIRMSKVAKKEGEHRSNPVTSSMPMIFPDIDREREMSAMVSALTQVVSGDVPSDYTASHQDSTYLNIAQASATPSSSSFYGSSSAATTSTEDGTFSQRGSSSSPAVPTSKHQYCFILYCQITYILMGPRMLLKFKKKNLFMGNTDREGRSEMMEMRNAVYEYRAENRREQGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDETALRFRGNKAKLNFPENVTLRSPPPNLHSLQIDHMVSHVQPSLTPPPPASSSSPFSAFASTVTPLPSLYPEQTQMSDSEYLAASSFSPAGYTFNSG	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju13g1903	324	ProSiteProfiles	AP2/ERF domain profile.	186	243	IPR001471	GO:0003700\|GO:0006355
	Alju13g1903	324	PANTHER	DNA-BINDING DOMAIN	119	277	IPR044808	GO:0003700\|GO:0009873
	Alju13g1903	324	SMART	rav1_2	186	249	IPR001471	GO:0003700\|GO:0006355
	Alju13g1903	324	MobiDBLite	consensus disorder prediction	86	119	-	-
	Alju13g1903	324	Pfam	AP2 domain	186	235	IPR001471	GO:0003700\|GO:0006355
	Alju13g1903	324	FunFam	Ethylene-responsive transcription factor 2	185	244	-	-
	Alju13g1903	324	CDD	AP2	186	245	IPR001471	GO:0003700\|GO:0006355
	Alju13g1903	324	Gene3D	AP2/ERF domain	185	245	IPR036955	GO:0003700\|GO:0006355
	Alju13g1903	324	SUPERFAMILY	DNA-binding domain	186	244	IPR016177	GO:0003677
	Alju13g1903	324	PRINTS	Ethylene responsive element binding protein signature	187	198	IPR001471	GO:0003700\|GO:0006355
	Alju13g1903	324	PRINTS	Ethylene responsive element binding protein signature	209	225	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju13g1903	Alju-ChrAlju13	36550516	36551490	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju13g1903	176	263	AP2-EREBP Transcription Factor Family	AT5G61890	68.132	1.26e-33	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju13g1903		AP2	1.2e-14	CL0081