Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1899 ATGGACTTTGACGAATACGATTACTTGGAGAAGACAGTGGAGGGGCAGGAAGATCGAGATTCGAAGAAGAAGAACGCGAGCAGCGAGAAGATTGAAAGGAGTTACAGGAAGCGCGAGGTAGACGGGAATCTGGATGGTGAAGAAAAGAAGAGCCAGAAGATCAGAGGCGACGAGGAGAATGGGTCTAAGAAGGATCGTGATGACCGCGTCAGAGAACGGTCTAGCCGCGAAAAGGAGCGCCATAGGAGTGGCAAGGAGAGGGACGGGGAGAGAGATGGGGAGAGAGAGCGAGAGAGGAGTAATAGAGACAAGGATAGGGAGAAGGAGAGAGACCGAGATAGGGATAAGGATAAGGAGAGGGATAGAGAAAGAAGAGACAAAGAGAGGGAGAGGGATAGAGAAAGTGAGAGGGAGAGGAGAGAGAGGGATAAAGAGAGGGAAAGAGAGATGGAGAGAAGGGAGAGGGAGGAGAGGGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATAGAGATAGAGAGAGAGAACGAGAACTGGAAATTAGAGATAGCCGGAGGTTCAGAGACAAGAAAGAGGCCGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCTTAAAGGCCACAGAGAGAGATGTTTATGAATTTTTCTCAAAAGCTGGGAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAATTCAAGACGGTCTAAAGGAGTTGGGAAGGTGATGGATGATACATCAAAAGAAACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCCCTACATCTCTTTGCTGTATGCATTGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTATCTCTGGTCAACTGCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACCGGAGCTGCAGGTGTAGCAGGACCATATGGAGCAGCAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGCTGAGGGAAATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTACAACTGCCTACTGACCTGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTGCCCATCTTGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTAGGACTATCAAGGTTTCATGTGTGACAGATCACATTGGGAGCCAAGACACAAGTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAATCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCATTGCAGGGTCTGTTGGTGTGCCCGTTGTGAATGGGTCAGTTCCTACTCAACAGTCTGTTAGTTTGCCTAGTGCTCCAGGTTTAATGCCCACATCAGCTCCCCCAACACAAATCATGCCTTCCCCTGTGGTAGAACCTGTAGGAAGCCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCTACCACTGAGACGGAACCAGATTTTGATATTGACATTAAGGAGGATGTTGCAGAGGAATGTTCTAGATTTGGCCGGGTGAAGCATATTTATGTAGACAAAAGAAGTGCAGGATTTGTGTACTTGCGTTTTGAATCGGTGGAAGCAGCAAGTGCTGCTCAACGAGCTATGCACATGAGATGGTTTGCACGCAGGTTGATTTCAGCTGTTTTCATGGAACCCCAGCTATATGAAGCCAAATTTAAAGTGGAAGCTTGA 1812 0.468 MDFDEYDYLEKTVEGQEDRDSKKKNASSEKIERSYRKREVDGNLDGEEKKSQKIRGDEENGSKKDRDDRVRERSSREKERHRSGKERDGERDGERERERSNRDKDREKERDRDRDKDKERDRERRDKERERDRESERERRERDKEREREMERREREERERSRRSRSRSDRDRERERELEIRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGKVMDDTSKETQLELSALEFLFPYISLLYALYIEFYDAMSVPMAIAISGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAADRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPTDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHIGSQDTSAKSADFDDDEGGLALNAQSRALLMQKLDRSGIATSIAGSVGVPVVNGSVPTQQSVSLPSAPGLMPTSAPPTQIMPSPVVEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVAEECSRFGRVKHIYVDKRSAGFVYLRFESVEAASAAQRAMHMRWFARRLISAVFMEPQLYEAKFKVEA 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1899 603 CDD RRM3_RBM39_like 508 590 - -
Alju13g1899 603 FunFam Splicing factor CC1-like 320 425 - -
Alju13g1899 603 SUPERFAMILY RNA-binding domain, RBD 335 591 IPR035979 GO:0003676
Alju13g1899 603 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 599 IPR006509 GO:0003723|GO:0005634|GO:0006397
Alju13g1899 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 311 IPR000504 GO:0003723
Alju13g1899 603 FunFam Splicing factor, CC1-like protein 504 603 - -
Alju13g1899 603 MobiDBLite consensus disorder prediction 1 174 - -
Alju13g1899 603 CDD RRM1_RBM39_like 205 307 - -
Alju13g1899 603 SMART rrm1_1 205 273 IPR000504 GO:0003723
Alju13g1899 603 SMART rrm1_1 510 587 IPR000504 GO:0003723
Alju13g1899 603 SMART rrm1_1 337 410 IPR000504 GO:0003723
Alju13g1899 603 SUPERFAMILY RNA-binding domain, RBD 195 250 IPR035979 GO:0003676
Alju13g1899 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 414 IPR000504 GO:0003723
Alju13g1899 603 Gene3D - 505 603 IPR012677 -
Alju13g1899 603 Gene3D - 330 428 IPR012677 -
Alju13g1899 603 CDD RRM2_RBM23_RBM39 338 415 - -
Alju13g1899 603 NCBIfam splicing factor, CC1-like family 279 599 IPR006509 GO:0003723|GO:0005634|GO:0006397
Alju13g1899 603 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 429 527 IPR029123 -
Alju13g1899 603 Gene3D - 136 321 IPR012677 -
Alju13g1899 603 Coils Coil 133 160 - -
Alju13g1899 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 250 IPR000504 GO:0003723
Alju13g1899 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 408 IPR000504 GO:0003723
Alju13g1899 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 533 585 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1899 Alju-ChrAlju13 36519661 36525152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1899 316 409 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 8.22e-08 53.5