Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1889 ATGGATTTGGACGATTTCCGATCCATTTTGGAGACTGCGGGCGTTGACGTGTGGACTTTCATCGACACCGCTATCACAGTCGCTTCCTTGGATTACGGGAATGACTTGAAGAATCGCCGGGATGGAATCGTTGAGCGCCTCTATGCTGCTACTTCCGCTCCTGCGTCCTGTCGGAATTGCGAGCCCAATCACCTCAGGGCTAACGGCCGCGGAATCGGCGCTCCAATTAAGAAGCACAGCAGTCCTCTGCCCGACAAAAGTTGTGCCTCGCCTGCAACGCCGCAGTCCTTGGGTAAAGAGGACGACGAAGACGACGAGGAGATAGATCCTTACGGAGGTTTGTTCGATGATGAGCAGAAGAAGATTCTGGAGATTAAAGAGCTACTTGAAGACCCTAACCAGTCTGAAGAATCATTGGTGGACTTGCTACAAAGTCTTGCAGACATGGATATCACATTCCAAGCGCTGAAGGACACTGACATTGGGAGGCACGTGAATCGTTTGCGAAAGCACTCGTCCAATGATGTTCGGAGATTGGTGAAGCTCCTTGTCAGGAAATGGAAAGACATTGTGGATGAATGGGTGAAGTTGAATCCACCAGCTGAGCACGCCTCGCTCATGGCTGATGGGGACTCGCCTCCGCCCAAAATCACCGCCCAGAACGGCTATCATCAGATTCCTGATTTTGCTTACTCGCCAAATCCACATAATGGTAGTTCTGGGTCGGACCGGAACAATTCAGAGGCTGAACTAAAACCAAAACCTATTCCCCGGAAAGAAGCTCCACCAAAACCAGCGCCATCTGCCTCCATGTCTGCTTCTGCTCCGCCTCAAAACAGACAGAGAGACCAGAGGGAAAGCAATTTTGACTCGGAGAGACTTGCTTCGGCAAGAAGGCGGCTTCAAGAGAACTATAAGGAAGCGGAAAATGCCAAAAAGCAAAGAACCATTCAGGTGATGGACATCCATGAGTTACCGAAACCAAAAGCCAAGAACGCCTTCTTTGCCAAGAACAAAGGCGGCGGAGGCGGTTCTCAGGGAAGGCACTGGTGA 1053 0.51 MDLDDFRSILETAGVDVWTFIDTAITVASLDYGNDLKNRRDGIVERLYAATSAPASCRNCEPNHLRANGRGIGAPIKKHSSPLPDKSCASPATPQSLGKEDDEDDEEIDPYGGLFDDEQKKILEIKELLEDPNQSEESLVDLLQSLADMDITFQALKDTDIGRHVNRLRKHSSNDVRRLVKLLVRKWKDIVDEWVKLNPPAEHASLMADGDSPPPKITAQNGYHQIPDFAYSPNPHNGSSGSDRNNSEAELKPKPIPRKEAPPKPAPSASMSASAPPQNRQRDQRESNFDSERLASARRRLQENYKEAENAKKQRTIQVMDIHELPKPKAKNAFFAKNKGGGGGSQGRHW 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1889 350 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 201 IPR035441 -
Alju13g1889 350 MobiDBLite consensus disorder prediction 71 113 - -
Alju13g1889 350 Coils Coil 291 318 - -
Alju13g1889 350 MobiDBLite consensus disorder prediction 232 246 - -
Alju13g1889 350 ProSiteProfiles TFIIS N-terminal domain profile. 117 194 IPR017923 -
Alju13g1889 350 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 350 IPR044790 -
Alju13g1889 350 SMART TFS2_5 122 193 IPR003617 GO:0005634
Alju13g1889 350 MobiDBLite consensus disorder prediction 204 350 - -
Alju13g1889 350 Pfam TFIIS helical bundle-like domain 142 191 IPR017923 -
Alju13g1889 350 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 116 204 IPR035441 -
Alju13g1889 350 MobiDBLite consensus disorder prediction 283 330 - -
Alju13g1889 350 CDD TFIIS_I 119 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1889 Alju-ChrAlju13 36466577 36468623 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Alju13g1889 Med26 1.3e-11 No_clan