Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1881 ATGTATGCTTCTTCTACTTCCCCTAGCCCCCTGATTCTCCAGGATCTTCTTGGGGATTTCCATTCCAGAAGGTTGCTCCTTTTGCACAACCCACTAATTAACTCACAGGCCAATCCTCCGGCTTCCTTAAACACCCACAATTCGACGGACAACTACCTAGGAAATGGCAATTTCGATGCGAATGTTGTCATGGTGCTCTCTGTGTTGTTGTGTGCTCTTATTTGCTCGCTGGGCTTGAACTCCATCATAAGGTGTGCCTTGAGGTGTTCCAATCTGGTGGTCACCGTCGGGCCCGCCGCCGCCGGCAACAACTCTCCGGCTAGATTGGCCAACACTGGAGTGAAGAAGAAGGCTATCAAGACTTTCCCCACTGTAAACTACTCCGCCGAGCTGAAGCTACCAGGTTTGGACACAGAGTGTGTGATATGCTTGTCAGAGTTCAGCAATGGCGAACGTGTCAGAATTTTGCCAAAGTGCAACCATGGCTTCCATGTGAAGTGCATTGACAAGTGGCTGAGCTCACACTCGTCTTGTCCTAAGTGCAGGCAGTGCCTAATTCAAACTTGCCAGAAGATTGTTGGATGCACCACCCAGGCTAGCTCCTCCCAGCCACCTGAAACCATTGTTAGGATTACGCCTCTTGAACCAGAAGGTTTGGTCCGTGACTACAGGGAATTAAGCACTTAA 687 0.4993 MYASSTSPSPLILQDLLGDFHSRRLLLLHNPLINSQANPPASLNTHNSTDNYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVTVGPAAAGNNSPARLANTGVKKKAIKTFPTVNYSAELKLPGLDTECVICLSEFSNGERVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGCTTQASSSQPPETIVRITPLEPEGLVRDYRELST 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1881 228 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Alju13g1881 228 FunFam RING-H2 finger protein ATL73 102 187 - -
Alju13g1881 228 SMART ring_2 140 181 IPR001841 -
Alju13g1881 228 SUPERFAMILY RING/U-box 118 187 - -
Alju13g1881 228 CDD RING-H2_EL5-like 139 182 - -
Alju13g1881 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Alju13g1881 228 Pfam Ring finger domain 139 182 IPR001841 -
Alju13g1881 228 PANTHER RING-H2 FINGER PROTEIN ATL78 15 219 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1881 Alju-ChrAlju13 36414068 36414754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1881 32 186 C3H Transcription Factor Family AT3G10910 46.541 4.41e-43 142