Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1871 ATGGGGAGAGATGATCTATGCGTCACAATTCCTAGCTTCTTCAGGTGCCCAATATCGCTTGATGTCATGAAATCCCCCGTCAGCCTCTGCACCGGCGTCACTTACGATCGTTCCAGCATCCAACGCTGGCTCGATGACGGCAACAACACCTGCCCCGCCACGATGCAGGTACTTCAATCCAAGGAATTCGTCCCTAACCTTACTCTCCAAAGACTTATCCAGATCTGGACCGACTCTGTTCAACACCGAATCGAATCTGCCGATTCCCCAGCTGCTAAATCGGTCCCAGCCCGGGAACAAGTCGTTGACGCTATCCGAGATTTGGAGAACAAGAGCGAAAATCCTTTGTTCTCCCTCGCTGTAATTTTATCATTTGCAGAAGAATCCGAAGAGAACCGTGAATTCCTCGCCAACATAGAGGGATTAGTACCTTTGCTGGTTGGTTTCCTCGACAATGTCCATGGTGGAATTACTCGGAGCGTTGAATTTCTTGAGAAAGTTGTCAAGGCCTTGGAATTGGTTCTCAATAAAGCAAAAGATGATGAGAGATTGAAGCATTCAATTGTTAAGAGCGAGCAAGGCAATTGTTTAGCTTCTCTACTTCTTGTTCTGCAACGAGGTAGCTCTGATTCGAAAATTGTGTCGGCTAGGATTTTGAAATTCGTGGCTGCGGATGTTGAATCGAAAATCTTGATCGCTGAAAAGGAAGGCATAATTCATGAATTGCTTAAAATGATATCAGGCAAAGATGCGATGCTAATCGAGAACGGCTTAGCCTGCTTGGTTGCAATCACAACGCCGAAAAGAAACAAGGTGAAATTGATCCATCTCGGGGCTGTGAAGAAGTTATCAGAATTGCTTTCGCAGTCGAAGTGGAGCGTTTCCATCACCGAGAACGTACTGAAGCTTCTAGAAACAGCGTCGACGACCAAGGAAGGAAGGTTGCAGATCTGTGAGGACCCGAATTGCGTGGCGTCGATATTGCAGAAGGTCCTGAAAGTATCAAATGTCGCAACGGAGCACGCAGTGACTATACTTTGGAGCGTATGTTATCTATTTCGTGATCAGAAGGCGCAAGAAGCAGTGACGAAGGCGAATGGGTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGTTCGCCGGGAGTTCGTCAAATGTGCGCCGATCTGCTCAAGATTTTCCGGGTTAACTCCAAGTCATGCCTCTCTTACTACCACACCAAGACCACCCACATCATGCCCTTTTGA 1248 0.4704 MGRDDLCVTIPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQVLQSKEFVPNLTLQRLIQIWTDSVQHRIESADSPAAKSVPAREQVVDAIRDLENKSENPLFSLAVILSFAEESEENREFLANIEGLVPLLVGFLDNVHGGITRSVEFLEKVVKALELVLNKAKDDERLKHSIVKSEQGNCLASLLLVLQRGSSDSKIVSARILKFVAADVESKILIAEKEGIIHELLKMISGKDAMLIENGLACLVAITTPKRNKVKLIHLGAVKKLSELLSQSKWSVSITENVLKLLETASTTKEGRLQICEDPNCVASILQKVLKVSNVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPGVRQMCADLLKIFRVNSKSCLSYYHTKTTHIMPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1871 415 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Alju13g1871 415 SUPERFAMILY ARM repeat 168 402 IPR016024 -
Alju13g1871 415 Gene3D - 86 401 IPR011989 -
Alju13g1871 415 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Alju13g1871 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 83 IPR013083 -
Alju13g1871 415 SUPERFAMILY RING/U-box 5 79 - -
Alju13g1871 415 CDD RING-Ubox_PUB 11 63 IPR045210 -
Alju13g1871 415 Coils Coil 161 181 - -
Alju13g1871 415 PANTHER WDSAM1 PROTEIN 9 403 IPR045185 GO:0061630
Alju13g1871 415 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Alju13g1871 415 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1871 Alju-ChrAlju13 36346262 36347509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1871 1 415 U-box Gene Family AT5G64660 52.817 1.38e-143 414