Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1869 ATGCTTAACTACGATGAAGCAGATATTGAAATATTCTTCGACTCAGCGGATTTTCTGCCACCTCAAAACTCTGTTTTAGACGAAGATTTGGCCAGTAACAAGTTTGGGTATGAAGTTTGGGTGAATAATCCTCAAAGTGTGAAGGAACGACGGCAACATTTTTTCCAGGAAATGGGTTTTACTGGTTTTTCCTCAAACGTTTGCTCTCAAGAGATTAACGTTAACGACTTGGAACTTGAAAGGATAACGGAGAGCGAAGGGGCAGTATTAAGTGCCTTCAGTTCTTCTCCTGAAGCAAATGTCTTGCTTGATGAACGTAACGGAGATGCAAACTTTGAAAGGAAGGTGTGTGAGTCTTCTTCTTCTTTAGGTGAAGATGACAGACTCAGGGAAGCTGAGGCGTCACAAGAATGTCTATATGGTCCCTTTGATATGAGCAAAAAGAAAATGAAGGGCTTGTGGAAGCTCTTTGTGAAGAGCAGGAAAACAATTGGAGGGAAAGTGAGATCAAAATTAAAAAAAGAGATGAGTAAAAGTCGCAGAATAAATGTAAAGCAGAACAAGAAGAGGTGGATGGAATTGAGTGCCTTGTATTTAGGAGAAGAGATTAGAGCTCATGAAGGCCTAATCTGGACTATGAAGTTTAGTCCTAATGGCCAGTTTCTAGCAAGTGGTGGTGAAGATGGGGTTGTACGTGTATGGCGTGTTATATCAATGGATACATCAAGCATTTGCTTCAATGCAGAAGACACTACTGTTAGTAAAGTGAATCAAGAAATCTCTTGTTCTTGGAGGAGAAAGTCAAATATATCATTCATGGCTCTTCCAAACAAGGTCCTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATACCAGTGATGTCTTGGATTTGGCTTGGTCTGATTCAAATATTCTTTTGTCGTCCTCAATGGACAAAACGGTTCGTTTGTGGCAAATTGGTTGTGATCAATGCATGGGAGTCTTCCATCACAATGACTATGTGACATGCATCCAAGTAAACCCAGTTGATAAGAACTACTTCATCAGTGGGTCTATAGATGGCAAAGTCCGAATATGGGGGTTATGTGAAGAGCGTGTTGTTGATTGGGCAGATATAAGGGATGTGATTACGGCTGTGAGTTACCAGCCAGATGGGAAGGGGTTTGTAGTTGGATCCATCACTGGTGCTTGTCGTTTTTATATTGCTTCAGGCAAACATTTCCAGTTTGAGGCAGAGATATGGGTTCATGGGAAAAAGAGATCAGCTGGCAACAAGATTACTGGCATTCAGTTTTCACAGAAAAAACACCAGAGAGTTATGATCACATCAGAAGATTCTAAAATTCGTGTGCTTGATGGCTTTGAACTTGTCCAGAAATTTAAAGGCGTTCCGAAATCGGGAAGCCAGATGTGTGGCTCATTTACATCAACAGAAAATCATATCATTTCTGTTGGAGAGGACTCCCATGTGTACATTTGGAATTGTAATGACTTGGAAAATTCATCATCCAAACACAAAAAATCTGAGCGTTGCTGTGAATACTTTTCCACTGAAGGTGTTACTGTGGCAATACCCTGGTTGGTAAACAGCACAGAACAAACAAGCTTATGTGGTAACTCAAAAATGCAACGTGCCCAAGAGGGTCGTACTAGTAGTAGAGATTCAGAGCGTTTTTCTCTTGGTAACTGGTTCAACATGGAAGGGACGTGCCGGGGTTCGGTGACGTGGCCGGAAGAGAAACTTCCAAGTTGGAATTTACCATTTGCAGAAGATGAATACGATCCCATAGAGGTGTGCAATGAAAGAGGTGGATCAGAAACATGGGGACTATCCTTTGTGGTGGCTGGTTTGGATGGAACCATCAAGACATTCCATAACTTTGGATTGCCTGTTAGGCTTTAG 1911 0.4155 MLNYDEADIEIFFDSADFLPPQNSVLDEDLASNKFGYEVWVNNPQSVKERRQHFFQEMGFTGFSSNVCSQEINVNDLELERITESEGAVLSAFSSSPEANVLLDERNGDANFERKVCESSSSLGEDDRLREAEASQECLYGPFDMSKKKMKGLWKLFVKSRKTIGGKVRSKLKKEMSKSRRINVKQNKKRWMELSALYLGEEIRAHEGLIWTMKFSPNGQFLASGGEDGVVRVWRVISMDTSSICFNAEDTTVSKVNQEISCSWRRKSNISFMALPNKVLQIEESPLQEFFGHTSDVLDLAWSDSNILLSSSMDKTVRLWQIGCDQCMGVFHHNDYVTCIQVNPVDKNYFISGSIDGKVRIWGLCEERVVDWADIRDVITAVSYQPDGKGFVVGSITGACRFYIASGKHFQFEAEIWVHGKKRSAGNKITGIQFSQKKHQRVMITSEDSKIRVLDGFELVQKFKGVPKSGSQMCGSFTSTENHIISVGEDSHVYIWNCNDLENSSSKHKKSERCCEYFSTEGVTVAIPWLVNSTEQTSLCGNSKMQRAQEGRTSSRDSERFSLGNWFNMEGTCRGSVTWPEEKLPSWNLPFAEDEYDPIEVCNERGGSETWGLSFVVAGLDGTIKTFHNFGLPVRL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1869 636 SUPERFAMILY WD40 repeat-like 202 500 IPR036322 GO:0005515
Alju13g1869 636 PRINTS G protein beta WD-40 repeat signature 350 364 IPR020472 -
Alju13g1869 636 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Alju13g1869 636 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Alju13g1869 636 Pfam WD domain, G-beta repeat 203 234 IPR001680 GO:0005515
Alju13g1869 636 Pfam WD domain, G-beta repeat 285 320 IPR001680 GO:0005515
Alju13g1869 636 Pfam WD domain, G-beta repeat 326 362 IPR001680 GO:0005515
Alju13g1869 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 364 IPR001680 GO:0005515
Alju13g1869 636 SMART WD40_4 283 321 IPR001680 GO:0005515
Alju13g1869 636 SMART WD40_4 324 363 IPR001680 GO:0005515
Alju13g1869 636 SMART WD40_4 196 235 IPR001680 GO:0005515
Alju13g1869 636 SMART WD40_4 365 404 IPR001680 GO:0005515
Alju13g1869 636 SMART WD40_4 456 497 IPR001680 GO:0005515
Alju13g1869 636 SMART WD40_4 409 455 IPR001680 GO:0005515
Alju13g1869 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Alju13g1869 636 Gene3D - 188 533 IPR015943 GO:0005515
Alju13g1869 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 364 - -
Alju13g1869 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 322 - -
Alju13g1869 636 PANTHER WD REPEAT DOMAIN 44 165 633 IPR040324 -
Alju13g1869 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Alju13g1869 636 FunFam WD repeat-containing protein 44 187 529 - -
Alju13g1869 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 322 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1869 Alju-ChrAlju13 36327542 36330085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1869 287 397 U-box Gene Family AT2G33340 33.058 5.02e-07 50.8