Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1863 ATGAGTGGAAGTAGCAGAAGGCGTTCCTCAAAGTGGGATTTAAGGGATGAACCTGAGTTTGTCCCTGACAGTAAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCAAAGTGGTCTTATTTGGAAGACTATGATAGAGATCTGGATACCAAAATGGCATGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGCAAGAGGCGCAGTCATTCCCCAAAAAATGGTTTGGACAGGAGTAGAAGCCGGAGCCGGAGCCCTGCCCATGGTTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGCTGGAGGATTGCCCCAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGACAATCGTGATTATGAGGATGGCTGGGACACTAGAAACAGGAAAGATGGACCTCCTAGATATTCTGCTCCCTATGAAAGCAGGGACTATTCTGCTAGGAGTGGAAGATCAAATGAGACTTGTATCCATTTTGCACAAGGAAAATGTAGAATGGGAGCATCTTGCAAGTACGTGCATCATAGCAATTCTGATGACATGATTAAAGGAAATGTAGATGATTCAACTCGAGAGAGGGAGTTTGATGAAAGGCGCAGAGAGAGTTCTTTTGAGCATGGCGGTGGGCATGAGCCAAACCGCTTTAGTGATACTCCCTGCAAGTTTTATGCAGCAGGTAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGACAAGCAAGCATCTAGGAGCCCAAATAGAAGATTAAGAGATGACAGGTGGGGGAACAATCTAGGCAGAGATCAGACACTGGATAGACCAAGAGGGAGTAACTCAGTTAGTCCTAGTAGAAGGCTAAGAGATGATCGATGGGGTCCAGATGGCAACATGGTTGACATGGATAAGATGTGGGATGGCCCAAAACTGAATGATGCTGTTGCTGTCTCAGATACAGCAAAGCTGGGTGAAGATAAGAGTGGAAATATGGGTATACAAGAACCTGGATTCACTACTTGGCCCAAGGCTGACGGATGGGGCAATAATTTAGATAACAACAAAGTGTATGCTGAGCCACCATTCGTAGGTGACAAGAAGAAAGCAGAGCAATGGAAGACAGAAAGTGCTGGTGCCACCACGGGTGCTCCCCAATCGATTGGGACTGACAAATGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGAGGATCTTCTGGGCATATTGAAGACAAGAGTGGGCAGAATAAACAGGGTTTGACCCAGGGTGGTGCATATTTAGCCGCCTCCAATCATCACAGATTACAAGTTGCTCCAGGACAAGGTTTCAATCAGAACTCACAGAATGCAAATGCTTTGCGTCCTTCTAGCAGTAATTTGGTAGGACAAAGTCAAGGGGCAGTCCTTGTCGTTCCTCCACTTGGAGGGATTGTTGAAGCTATACAGAACCAAGCTTCTTCTGTAAAAAAGTACAGTGTTGAACCAAATATCATAGATGCAAGCTTACCGCATGTTAGTACTATAAATACTCCAACTCAAAACATGGTGAGCAATGAACAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCATTTCCTGGGAACAGGCCAGCAACTTCCACAAATTTATGCTGCCCTAAGTTCTCACGATGTGAAGGACACATCCTCCCTAGCCAAAGCTGAAATGTCTGGGGAGCCTGTTTCCAGTGCATACATCAAGCCAGATCCTGTTACTGGATCCCGGAAGCAGTATGATCCAATGAGTGATAGTATGGAGCCAAAGAAGACTGATGCAGCTGGAATCACGCTAGCCTTTTCTCCTAATAAAACAATTGCTGATAGTTCAGGGAGACAAAATCTTGGTGATTCTTGCAAGACTTCAGAAGAACAAATTGTCGAGAGTGAAAATTTGATCCCATTGCAGCCTGGTCAAAAAGTTGAAGCTAACAAGGGAAACAATGACGGGGCAGCTGAGGAAAGACAAGATCCTCAAGCAGATGATAAAAGCTTAAAAGATAATGGTCCTTCAGAAAATATGGACCAAAATGGGCCTGATGAGGTGAAAAAAACAAAAGATGTGAAGGGGATTCGTGCTTTTAAATTTGCGCTGGTTGAATTTGTTAAGGAGCTTCTGAAACCAACGTGGAAAGATGGTCACATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACGATGCAGGGGTCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCAGCTTCTAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAGAAGGTTCAGAAGGCTTAG 2412 0.4411 MSGSSRRRSSKWDLRDEPEFVPDSKQLRSGWSSANVTGSNSSKWSYLEDYDRDLDTKMAWDADESYGMKMSPGLEEWKRKRRSHSPKNGLDRSRSRSRSPAHGFRWESGVNDRNRMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDNRDYEDGWDTRNRKDGPPRYSAPYESRDYSARSGRSNETCIHFAQGKCRMGASCKYVHHSNSDDMIKGNVDDSTREREFDERRRESSFEHGGGHEPNRFSDTPCKFYAAGNCRNGKYCRFSHDKQASRSPNRRLRDDRWGNNLGRDQTLDRPRGSNSVSPSRRLRDDRWGPDGNMVDMDKMWDGPKLNDAVAVSDTAKLGEDKSGNMGIQEPGFTTWPKADGWGNNLDNNKVYAEPPFVGDKKKAEQWKTESAGATTGAPQSIGTDKWLVDAEMSPDWNYGRGSSGHIEDKSGQNKQGLTQGGAYLAASNHHRLQVAPGQGFNQNSQNANALRPSSSNLVGQSQGAVLVVPPLGGIVEAIQNQASSVKKYSVEPNIIDASLPHVSTINTPTQNMVSNEQLAQLSSLSASLVHFLGTGQQLPQIYAALSSHDVKDTSSLAKAEMSGEPVSSAYIKPDPVTGSRKQYDPMSDSMEPKKTDAAGITLAFSPNKTIADSSGRQNLGDSCKTSEEQIVESENLIPLQPGQKVEANKGNNDGAAEERQDPQADDKSLKDNGPSENMDQNGPDEVKKTKDVKGIRAFKFALVEFVKELLKPTWKDGHINKEHYKTIVKKVVDKVTGTMQGSHIPQTQEKIDHYLSASKPKLNKLVQAYVEKVQKA 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1863 803 Gene3D - 242 312 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 678 700 - -
Alju13g1863 803 Pfam RNA-binding, Nab2-type zinc finger 185 203 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 26 43 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 633 660 - -
Alju13g1863 803 SMART c3hfinal6 243 269 IPR000571 GO:0046872
Alju13g1863 803 SMART c3hfinal6 121 145 IPR000571 GO:0046872
Alju13g1863 803 SMART c3hfinal6 180 205 IPR000571 GO:0046872
Alju13g1863 803 MobiDBLite consensus disorder prediction 73 101 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 8 23 - -
Alju13g1863 803 Gene3D - 121 222 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 425 444 - -
Alju13g1863 803 ProSiteProfiles Zinc finger C3H1-type profile. 179 206 IPR000571 GO:0046872
Alju13g1863 803 MobiDBLite consensus disorder prediction 1 43 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 633 716 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 588 621 - -
Alju13g1863 803 ProSiteProfiles Zinc finger C3H1-type profile. 119 146 IPR000571 GO:0046872
Alju13g1863 803 MobiDBLite consensus disorder prediction 207 241 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 150 176 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 150 166 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 267 289 - -
Alju13g1863 803 SUPERFAMILY CCCH zinc finger 246 268 IPR036855 GO:0046872
Alju13g1863 803 ProSiteProfiles Zinc finger C3H1-type profile. 243 270 IPR000571 GO:0046872
Alju13g1863 803 Pfam CCCH-type zinc finger 248 268 IPR041367 -
Alju13g1863 803 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 144 IPR000571 GO:0046872
Alju13g1863 803 MobiDBLite consensus disorder prediction 207 245 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 61 118 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 462 483 - -
Alju13g1863 803 MobiDBLite consensus disorder prediction 267 318 - -
Alju13g1863 803 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1863 Alju-ChrAlju13 36278454 36282708 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju13g1863 zf-CCCH 5.1e-05 CL0537