Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1843 ATGTCCAGAAGCAATAGCAGTGAGAGTAAGAGTTGTAACCGAGGCCATTGGAGACCAGCTGAAGATGAGAGACTGAAACAGCTTGTGGCACAGTACGGTCCCCAGAACTGGAATTTCATTGCAGAACATCTTGATGGTAGATCAGGGAAAAGTTGCAGATTGAGGTGGTACAACCAACTAGACCCAAACATAGTGAAAAGGCCATTCACAGAGGAGGAGGAAGAAATACTGTTAGCTCTTCACAAGGTAAAAGGAAACAAATGGGCTGCAATTTCAAGGTTCTTGCCTGGAAGAACTGATAATTCTGTCAAGAATCACTTCCATGTCCTTATGGCAAGAAGAAAGAGAGAACGTTTCACACTCTTGGGTGACAGAAGCATCAACCACAACACTAGTATTAGCCATAATCATAGGCCTGCCTCAGGGATTAACAACTTCACCTTCCAAAACAACAGAAACTTGGGAATCTTCGATCTGAATCCTTGGAATACTCAAAGTGATACTTCGACCATCTCATCAGAGTTACTGAGTTTTGAAGCTTCTGGTAATGCTGCTAATAATAATAAGTCCCACATCGATCACTTTATTAATGCTTCGATTCCTGCTGCTTCTTGTTCACTTGGAAGTTATAAAAGTTTTACAGCCCCAGGAATACCCAGTATTGGTAAGGTCGTTCCTCTTTCTCAGAGGTTTTCAAAACCTTATTTTGCCCAAAGAACAGAGGATTATTCCATCAAAGGCATGATGGCAGACAAGATAACTCTGGAAGAACAAGTTGAAAAGCTTAAGGATGTTTCCTTTATAGACTTTCTTGGTGTGGGAAGTTGTTCTGCCAGCGACAGTTGA 846 0.4173 MSRSNSSESKSCNRGHWRPAEDERLKQLVAQYGPQNWNFIAEHLDGRSGKSCRLRWYNQLDPNIVKRPFTEEEEEILLALHKVKGNKWAAISRFLPGRTDNSVKNHFHVLMARRKRERFTLLGDRSINHNTSISHNHRPASGINNFTFQNNRNLGIFDLNPWNTQSDTSTISSELLSFEASGNAANNNKSHIDHFINASIPAASCSLGSYKSFTAPGIPSIGKVVPLSQRFSKPYFAQRTEDYSIKGMMADKITLEEQVEKLKDVSFIDFLGVGSCSASDS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1843 281 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Alju13g1843 281 FunFam MYB transcription factor 14 65 - -
Alju13g1843 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Alju13g1843 281 CDD SANT 76 111 IPR001005 -
Alju13g1843 281 Gene3D - 14 65 - -
Alju13g1843 281 SUPERFAMILY Homeodomain-like 13 107 IPR009057 -
Alju13g1843 281 CDD SANT 17 58 IPR001005 -
Alju13g1843 281 PANTHER MYB PROTEIN-RELATED 14 165 - -
Alju13g1843 281 Gene3D - 67 137 - -
Alju13g1843 281 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Alju13g1843 281 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Alju13g1843 281 SMART sant 65 113 IPR001005 -
Alju13g1843 281 SMART sant 13 62 IPR001005 -
Alju13g1843 281 Coils Coil 245 265 - -
Alju13g1843 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Alju13g1843 281 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1843 Alju-ChrAlju13 36147718 36148910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1843 1 277 MYB Transcription Factor Family AT4G33450 42.857 5.38e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju13g1843 Myb_DNA-binding 7.2e-16 CL0123