Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1838 ATGAACGAAGCTGAAATGACGATTCCTCACTTGTTCAGATGCCCAATAAGTCTAGACTTGTTTGAGGATCCAGTGACTTTGTGTACAGGCCAAACCTATGATAGGTCCAGCATAGAAAGATGGCTTGCTCAAGGTAATCTCACTTGCCCTGTTACAATGCAGAAGCTTCATGATCTATCTATCGTCCCCAATCATACTCTTCGTCATTTGATCGATCAGTGGCTTCAATTGTACCCTCAATTTGACCACTTTGGTAACTCTAAAACCATAGATTCTCTTGCCTCTCTGAAACGCACCCTTCAATCTAAGGAATCTTCCTTCCAGAACAAACTCCAAGCACTTGAAAAGATCAGCCTTTTATCTGATGAGTACTGCTCTTTCAAGAAATCTTGCTTCCTTCAGTTGGGTTTCTTGCCTCTTCTTTTGGGACTAGTTTTTGGAGCTCAAATATTCAAAGAGCAGCATCTTCACATGGAGTTCATAGATCTAGCTCTTTCTTGCATTATAAAGTTGTTACCCCTTGAGACTACCTCAGAGCCTCTAAATATGCTCATACAAGAACCTAACTTCGAATCGTATCTTGTATTATTCGAAAAGGGCACTCCCAATATTAAAACCAGTCTGTGTAATCTGATAGATTCAGCAGCAACAGCACACATAGAAGAGGTATTGCTTATGCTTGGAAATTCCCAGAAACTACTCAATGAAATTGTTCATCTTGTGAGCCAAAATAACTGTGAGGCTTCCAGGGCAGCAATTAAAGCCATATCAGCTCTATGTTCCTTGCAATCAAACAGAGAGAATCTGGTAATAGCAGGGGCAATAAATGGAATCATGAGGTACATTTCAGGATGCGAAACAAGAGAGAAGAACTTGGCTCCATTGGGGATGCAGATAATAGAGAAGCTTCTGGTAATAGAGAGAGGCAAAGAAGCATTAGTGAATAGCCCAAATGGGATTCAAACTTTGGTGAAGATGGTGTTCAGAGTGAGTAATCATGAGTGTAGTGAGAATGCTGTGGGGTTACTGATAATGGTGTGCAGAGAAAGTGGACGAGGCAGAGAGGAGGCCATTGAAGAAGGAGTTTTGACTCAGTTGCTTTTGCTTCTGCAGAGCCAATGTAGTGCCAAGACGAAGACGAAGGCAAGAATGCTTCTCAAATTGCTAAGATCCAAGTGGGCTGAGAATGTACCAAAACAGGCCTGA 1206 0.4179 MNEAEMTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIERWLAQGNLTCPVTMQKLHDLSIVPNHTLRHLIDQWLQLYPQFDHFGNSKTIDSLASLKRTLQSKESSFQNKLQALEKISLLSDEYCSFKKSCFLQLGFLPLLLGLVFGAQIFKEQHLHMEFIDLALSCIIKLLPLETTSEPLNMLIQEPNFESYLVLFEKGTPNIKTSLCNLIDSAATAHIEEVLLMLGNSQKLLNEIVHLVSQNNCEASRAAIKAISALCSLQSNRENLVIAGAINGIMRYISGCETREKNLAPLGMQIIEKLLVIERGKEALVNSPNGIQTLVKMVFRVSNHECSENAVGLLIMVCRESGRGREEAIEEGVLTQLLLLLQSQCSAKTKTKARMLLKLLRSKWAENVPKQA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1838 401 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Alju13g1838 401 Gene3D - 90 302 IPR011989 -
Alju13g1838 401 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Alju13g1838 401 SUPERFAMILY RING/U-box 3 76 - -
Alju13g1838 401 Gene3D - 303 398 IPR011989 -
Alju13g1838 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Alju13g1838 401 PANTHER WDSAM1 PROTEIN 5 395 IPR045185 GO:0061630
Alju13g1838 401 SUPERFAMILY ARM repeat 234 390 IPR016024 -
Alju13g1838 401 CDD RING-Ubox_PUB 9 56 IPR045210 -
Alju13g1838 401 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Alju13g1838 401 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Alju13g1838 401 SUPERFAMILY ARM repeat 94 282 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1838 Alju-ChrAlju13 36105519 36106724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1838 8 396 U-box Gene Family AT1G49780 31.785 6.60e-45 159