Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1828 ATGGAAGATGAGAGCTACAACAAGTTGCCAAATGGGATCATTTCAGAAAGCCCTGAAAGTCCTTCCTTAAAGACATCAAGCAACAACAATAATAGTAACAGCAGCAGCAGCAACAGTAACAAAGAACAAGATCGGTTTCTGCCCATAGCAAATGTGGGAAGAATCATGAAGAAAGTGATGCCTCCGAATGGGAAAATCTCAAAGGACGCTAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGCTTCATCACCGGAGAAGCCTCTGATAAATGCCAGAAAGAGAAGAGGAAGACCATCAATGGAGATGATATTATATGGGCCATTTCAATCCTAGGGTTTGATGATTACGTGGACCCTTTGAAATGTTACCTTCAGAAGTATAGAGACATTGAAGGAGAGAAGCTTAATCTTCCAAAACAACAACGTTCTGAACAAAGGCTCCACCACCACCACCACCAAGACCAAACTAATAATATTAATAATAACAACAATAATAATAATAATTTGCCTTTAAGTAGAGTATATTCTTCCACAAACCTAATTTCTCATCAGCCTTCTTATGTTCCTTCTGGCCAGCCATATACTCTACCTTTCTCCCCAACTTCTATCAAACAGGACCAGATTGATTCGGGGGGACACTGAGTGAGAATCTTTGATAACGGAGCCAAAAGTCTCCACCGAGAAACGTCGCATGAGGTTGCAGCGGCGGAACTGGTCGGGTCACGCATTGGAGTCGGATCGGGTAGGCTAACCCGGCTGTGTAAGGAAGACAAGAGAAACACACCGTTTCCTAAAAGTGTCCTCCTATTCGCGTGA 822 0.427 MEDESYNKLPNGIISESPESPSLKTSSNNNNSNSSSSNSNKEQDRFLPIANVGRIMKKVMPPNGKISKDAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDIIWAISILGFDDYVDPLKCYLQKYRDIEGEKLNLPKQQRSEQRLHHHHHQDQTNNINNNNNNNNNLPLSRVYSSTNLISHQPSYVPSGQPYTLPFSPTSIKQDQIDSGGHXVRIFDNGAKSLHRETSHEVAAAELVGSRIGVGSGRLTRLCKEDKRNTPFPKSVLLFA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1828 273 MobiDBLite consensus disorder prediction 139 157 - -
Alju13g1828 273 ProSitePatterns NF-YB/HAP3 subunit signature. 77 93 IPR003956 GO:0005634|GO:0006355|GO:0043565
Alju13g1828 273 MobiDBLite consensus disorder prediction 158 174 - -
Alju13g1828 273 SUPERFAMILY Histone-fold 43 160 IPR009072 GO:0046982
Alju13g1828 273 MobiDBLite consensus disorder prediction 139 174 - -
Alju13g1828 273 FunFam Nuclear transcription factor Y subunit B-3 35 160 - -
Alju13g1828 273 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Alju13g1828 273 Gene3D Histone, subunit A 35 175 IPR009072 GO:0046982
Alju13g1828 273 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju13g1828 273 MobiDBLite consensus disorder prediction 10 45 - -
Alju13g1828 273 MobiDBLite consensus disorder prediction 1 46 - -
Alju13g1828 273 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Alju13g1828 273 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Alju13g1828 273 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1828 Alju-ChrAlju13 36027515 36030817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1828 12 207 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.223 8.83e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju13g1828 CBFD_NFYB_HMF 1.8e-27 CL0012