Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1824 ATGGCAGTTGATGATGATTACTTCGACCTTCACGACCTTGAGTCAGGGGACTTAGTTTTGCCCGGCTTTGATGATGAATTTTCAGAGAGCCAACCGTGGGTTCCTCTGCCTCCTGACTCGTTAGAAGACTTGACATCGTTGGAAGACTTACCCTGTGAATGGTTCTCCGATTTCTCTGATGATTTTATAGCTTCGAACCAAATTGCCAGTGACCAGCCTCGTATGCTTGGAAGTGTGGAGATAATAAGACAACAGACAAATGGAATTGTGAACGATGATTGGCTTGGGATCTCTAAAGATGCAATAAGTGGCTTTGCGAAGAAGAAGTGTAGAACGATGAAGCATAAAGCGAGACGAAGCGCTGTTTTGATTGAAAGAAAGAGGTGCAACCATTGCAAGGCGGAGGAGACGCCGCAATGGAGGTATGGGCCTGATGGGCCCAAGACACTGTGTAATGCCTGCGGTGTGAGGTTCAAGTCCGGAAGGCTGCTACCGGAGTATCGTCCGGCAGCCAGCCCTACTTTTGATGAACACAGGCATTCTAATTGCCATAGGAAAATAATGGCAAAGCGACGATTGGATTGCACACGCCCGCGGGAAAAGCCGGCGGGAGAGAGTAAATCCCACAGCAAAAACTGGCGGGAATCTCATTTCACCAAGACTCCCAGTCCCACCTCTGCACTATCTCTTGCTCATCCCTTCCAACATCTGAAAGCAGCCATGAACAACGACTCCCGAAAACGCCCGCCGCCGTCGCAACCCTCACCGGCCAACCAGCCTAAGAGCCAAGCGTTCTCACAGGAAGAAGAGTTCGTAGACGAGGATGTTTTCCTCGATGAAACCCTTATCTCTGAAGACGAGGAGTCCCTCATCCTCCGTGACATCGAGCAACGCCAGGCTCTCGCTTCTCGCATTGCCAAATGGACCCGTCCTCATCTCTCCTCTGAGTATCTTTCACAATCTTGTAGCCTTTTTTTTCAGCAGCTGGAGATCGATTATGTTATTGGAGAGAGTCATAAAGAATTGCTTCCAAATTCGTACGGAGCAGCCGCCATTATTAGAATATTTGGAGTTACGAAGGAAGGACATAGTGTTTGCTGCAATGTTCATGGATTTGAGCCATATTTTTACATCAGCTGCCCTCCTGGAATGAGACCGGATGATATTTCTGGTTTCCATAAAATCCTTGAGGGGAGGATGAAAGAGTCCAATAGAAACAGTAAAGTGCCACAATTTGTTCGTCGTATTGAAATGGTGCAGAGAAAGAGTATTATGCACTACCAGCAGCAGAACTCTCAGCCATTTTTGAAAATTGTTGTTGCACTGCCAACAATGGTTGCTAGTTGTCGAGGTATTCTTGACAGAGGTATTCAGATTGATGGCCTTGGCATGAAGAGCTTTATGACTTATGAAAGCAATGTTCTGTTTGCCCTTCGTTTCATGATTGATTGCAATATAGTTGGTGGGAATTGGATTGAAGTACCTGCGGGAAAATACAAGAAGACAGCAAAGAACTTGTCTTACTGCCAATTAGAGTTTGACTGCCTGTATTCAGAGTTGATTAGCCATGTGCCAGAAGGGGATTTTTCCAAGATGGCTCCATTTCGCATATTGAGTTTTGATATTGAGTGTGCTGGTCGCAAAGGTCATTTTCCTGAACCTACTCATGATCCTGTTATCCAGATTGCCAACCTGGTCACATTACAAGGAGAAGGTCAACCATTTATTCGTAACGTCATGACTCTTAAATCATGTTCACCTATAGTTGGCACTGAAGTGATGTCATTTGATACAGAAAGAGAAGTCCTTCTAGCATGGAGGGATTTCATCCGTGAAGTGGACCCTGATATTATAATTGGATATAATATTTGCAAATTTGACCTACCATATCTTATTGAGAGAGCTGATGCTCTGAAAATAGCGGAATTCCCAATTCTTGGACGCATTAGGAGTAGTCGAGTTCGAGTAAAAGATACAACTTTCTCATCAAGACAGCTTGGGACTAGGGAAAGCAAAGAGGTTACAATAGAAGGGAGAGTTCAGTTTGACTTGCTCCAGGCTATGCAGCGAGATTACAAACTAAGTTCTTATTCATTGAATTCTGTTTCAGCACACTTCCTCTCGGAGCAGAAAGAGGATGTTCACCATTCAATTATATCGGATCTTCAGAATGGAAATGCAGATACTAGGAGACGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAACGACTGTTGGATAAATTGATGTTTATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCACTTTCTTTTTTACTTTCTAGAGGACAAAGCATTAAGGTACTGTCTCAGCTTCTTAGGAAGGCAAAACAGAAAAACTTGGTTATTCCTAATGTCAAACAGGCTGGGTCAGACCAAGGAACATATGAAGGTGCCACTGTATTGGGAGCAAGAGCTGGATTCTATGAAAAGCCAATCGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCATATAATCTATGCTACTGCTCTCTGGTGACTCCAGAAGATGTTCGCAAGCTCAACCTGCCTCCAGAATCTGTGAACAAAACTCCATCTGGTGAAACGTTTGTTAAATCAAATTTACAGAAGGGAATACTTCCTGAAATTCTTGAAGAGTTATTAGCAGCCCGTCGAAGGGCAAAAGCCGATTTGAAGGAGGCAAAAGATCCTCTTGAGAAGGCTGTGCTGGATGGTCGACAGCTGGCTCTAAAGGTCAGTGCTAATTCTGTATATGGGTTTACAGGGGCCACTGTTGGTCAGTTACCTTGCATAGAGATATCTTCTAGTGTAACAAGCTACGGTCGGCAAATGATTGAGCACACAAAAAAACTCGTGGAAGATAAATTTACAACACTCAATGGTTATGAGAACAATGCTGAGGTCATATATGGAGACACTGATTCAGTCATGGTACAATTTGGTGTTTCCTCTTTAGAAGAGGCTATGAAATTAGGGAGAGAGGCTGCTGAATATATAAGTGGAACTTTCATTAAACCCATCAAACTAGAGTTTGAGAAGGTCTACTATCCATATCTCTTAATTAGCAAGAAGAGATATGCTGGTTTATTTTGGACAAAACCAGACAAATTTGACAAGATGGACACTAAAGGGATTGAGACAGTTCGAAGAGATAATTGTTTGTTGGTAAAGAACCTGGTCAATGACTGCCTTCACAAAATTCTGATTGACAGGGACGTCCCTGGGGCAGTCCAGCATGTAAAGAATGCAATTTCAGATCTACTCATGAACCGCATGGATTTGTCACTTCTGGTCATTACAAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTAAAAGCTGCTCACGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGTGATAGAGTTCCTTATGTCATAATTAAAGCTGCAAAAGGTGCGAAGGCTTATGAAAGGTCCGAGGATCCGATCTATGTGCTAGAGAACAACATACCAATAGACCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATCCTGAGAATTTTTGAGCCTATTTTGAAAAATGCTAGCAGGGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACGCCATCAAACAGTGGCATAATGAAATTTGCTAAGAAACAGCTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAGATCGCACTCTCTGCTTGCATTGCAAGGGAAGGGAGGCTGAGCTGTACTGCAAAACAGTTGCTCAAGTTTCTGATCTAGAGACGCTTTTTGGAAAGCTTTGGACACAGTGTCAAGAATGCCAAGGTTCCCTTCATCAGGATGTTCTCTGCACAAGTTGCAAATTCGAGATTGCCCTATTTTTTATAGAAGGAAAAAGGCACAGAAAGATATGGCCGAAGCAAAGTTGCAATTGGACCGGTGGAACTTCTAGGACATCCAGCTGTTCAGAATGTGATCATGTGGATCTTGCCACCTGA 4035 0.433 MAVDDDYFDLHDLESGDLVLPGFDDEFSESQPWVPLPPDSLEDLTSLEDLPCEWFSDFSDDFIASNQIASDQPRMLGSVEIIRQQTNGIVNDDWLGISKDAISGFAKKKCRTMKHKARRSAVLIERKRCNHCKAEETPQWRYGPDGPKTLCNACGVRFKSGRLLPEYRPAASPTFDEHRHSNCHRKIMAKRRLDCTRPREKPAGESKSHSKNWRESHFTKTPSPTSALSLAHPFQHLKAAMNNDSRKRPPPSQPSPANQPKSQAFSQEEEFVDEDVFLDETLISEDEESLILRDIEQRQALASRIAKWTRPHLSSEYLSQSCSLFFQQLEIDYVIGESHKELLPNSYGAAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMRPDDISGFHKILEGRMKESNRNSKVPQFVRRIEMVQRKSIMHYQQQNSQPFLKIVVALPTMVASCRGILDRGIQIDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPAGKYKKTAKNLSYCQLEFDCLYSELISHVPEGDFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPFIRNVMTLKSCSPIVGTEVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERADALKIAEFPILGRIRSSRVRVKDTTFSSRQLGTRESKEVTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNADTRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPLSFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSDQGTYEGATVLGARAGFYEKPIATLDFASLYPSIMMAYNLCYCSLVTPEDVRKLNLPPESVNKTPSGETFVKSNLQKGILPEILEELLAARRRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYENNAEVIYGDTDSVMVQFGVSSLEEAMKLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDVPGAVQHVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASRELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSNGDRTLCLHCKGREAELYCKTVAQVSDLETLFGKLWTQCQECQGSLHQDVLCTSCKFEIALFFIEGKRHRKIWPKQSCNWTGGTSRTSSCSECDHVDLAT 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1824 1344 FunFam DNA polymerase 1054 1210 - -
Alju13g1824 1344 MobiDBLite consensus disorder prediction 193 216 - -
Alju13g1824 1344 SMART GATA_3 123 173 IPR000679 GO:0006355|GO:0043565
Alju13g1824 1344 FunFam DNA polymerase 330 505 - -
Alju13g1824 1344 Gene3D Helix hairpin bin 881 933 - -
Alju13g1824 1344 PRINTS DNA-directed DNA-polymerase family B signature 825 838 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju13g1824 1344 PRINTS DNA-directed DNA-polymerase family B signature 917 929 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju13g1824 1344 PRINTS DNA-directed DNA-polymerase family B signature 978 986 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju13g1824 1344 Pfam C4-type zinc-finger of DNA polymerase delta 1236 1298 IPR025687 -
Alju13g1824 1344 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Alju13g1824 1344 Gene3D - 534 752 IPR036397 GO:0003676
Alju13g1824 1344 CDD POLBc_delta 807 1200 - -
Alju13g1824 1344 Gene3D - 124 173 IPR013088 GO:0006355|GO:0008270
Alju13g1824 1344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 185 - -
Alju13g1824 1344 MobiDBLite consensus disorder prediction 189 228 - -
Alju13g1824 1344 NCBIfam DNA polymerase (pol2) 479 1197 - -
Alju13g1824 1344 SMART polmehr3 533 992 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju13g1824 1344 FunFam DNA polymerase 573 807 - -
Alju13g1824 1344 CDD ZnF_GATA 128 177 IPR000679 GO:0006355|GO:0043565
Alju13g1824 1344 MobiDBLite consensus disorder prediction 242 266 - -
Alju13g1824 1344 Gene3D - 1054 1209 IPR042087 -
Alju13g1824 1344 FunFam DNA polymerase 881 933 - -
Alju13g1824 1344 SUPERFAMILY Ribonuclease H-like 347 772 IPR012337 -
Alju13g1824 1344 Gene3D DNA Polymerase, chain B, domain 1 329 506 - -
Alju13g1824 1344 SUPERFAMILY DNA/RNA polymerases 791 1201 IPR043502 -
Alju13g1824 1344 Pfam DNA polymerase family B 766 1199 IPR006134 GO:0000166|GO:0003677
Alju13g1824 1344 ProSitePatterns DNA polymerase family B signature. 980 988 IPR017964 GO:0000166|GO:0003676
Alju13g1824 1344 CDD DNA_polB_delta_exo 530 758 - -
Alju13g1824 1344 Gene3D Palm domain of DNA polymerase 807 1037 IPR023211 -
Alju13g1824 1344 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 309 1292 - -
Alju13g1824 1344 FunFam GATA transcription factor 124 173 - -
Alju13g1824 1344 Pfam DNA polymerase family B, exonuclease domain 359 702 IPR006133 -
Alju13g1824 1344 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1824 Alju-ChrAlju13 35968776 35983509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1824 252 1325 Core DNA Replication Machinery Family AT5G63960 80.055 0.0 1807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju13g1824 DNA_pol_B 1.2e-152 CL0194