Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1788 ATGGCAGTAAATCCGTCTCAGATGCGAGGGAGACCGGGAAAGAAAGCAGTACCGCCTACCGAAAAAGCGAATCGAATGAAGAAAGCAAGCACAGTCACTTTTCCTTCAAAACCCTTATGGGTTCTTCCCTATCGAACTCAAAACCTCCCTGACCTTTACACATTGGGAAGGAAATTGGGTCAGGGTCAATTTGGAACCACCTTTCTCTGCACAGAGAAGTCCACTGGTCGTACATATGCCTGCAAGTCAATCCCTAAGCGGAAGCTAATCTGCCAAGAGGATTACGACGACGTTTGGAGGGAGATTCAGATCATGCACCATTTGTCCGAGAACCCCAACGTTGTTAGAATCCATGGCACTTACGAGGACTTGTCCTCTGTTCACTTGGTCATGGAGCTCTGCGAAGGCGGAGAGTTGTTTGACCGGATAGTGAAGAAAGGGCATTACAGTGAGAGGCAAGCGGCTTCGTTGATCAAGACTATTGTAGAGGTTGTCCAAGCTTGTCACTCTCTTGGGGTCATGCATAGAGACCTCAAGCCAGAAAACTTCTTATTCGATAGCGTTGAAGAGGATGCTAAGCTTAAAGCCACTGATTTCGGACTTTCTGTTTTCTACAAGCCAGGTGAAACCTTTTCTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTGTTACGCAAGCATTATGGACCTGAGTCAGATGTGTGGAGTGCTGGGGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCTTTTTGGGCTGAAAGTGAAATAGGGATCTTCCGACAGATTTTACAAGGGAAACTTGATTTTCAGTCAGAACCATGGCCTAACATCTCAGAAAGTGCCAAGGATCTAATTAGAAAAATGCTTGATCAAAATCCGAAAAAGAGGCTTACAGCCCATGAAGTACTCAGCCACCCATGGATTGTTGATGACAATATTGCACCTGATAAACCCCTGGACTCTGCTGTTTTATCACGCCTGAAACAGTTCTCTGCAATGAATAAGCTTAAAAAGATGGCTTTACGTGTTATTGCTGAGAGGCTTTCTGAGGAAGAAATTGGTGGACTGAAGGAGTTATTCAAGATGATTGACACAGACAACAGTGGAACCATAACTTTTGATGAGTTAAAAGATGGTTTGAAGCGGGTGGGGTCTGAACTAATGGAGTCTGAAATCAGAGATCTTATGGAAGCGGCAGATATTGATAATAGCGGAACAATTGACTATGGTGAATTCATTGCTGCAACTATCCACCTAAATAAGCTGGAGAGAGAGGAAAATCTGTTGTCTGCCTTCTCATATTTTGATAAAGACGGTAGTGGTTACATAACCGTTGATGAGATTCAACAAGCCTGTAAGGAATTTGGTTTAGGAGATGTTCATATTGATGAAATGATCAAAGAAATTGATCAAGACAACGATGGACAAATAGATTATGCGGAATTTGCTGCAATGATGAGGATGGGCAATGGAGGGATTGGAAGGCGAACCATGAGAAACACATTAAATTTAAGGGACGCTCTGGGATTGATAGGCACTAGCTCTAATAACATTATGAGTGGTTAG 1575 0.4343 MAVNPSQMRGRPGKKAVPPTEKANRMKKASTVTFPSKPLWVLPYRTQNLPDLYTLGRKLGQGQFGTTFLCTEKSTGRTYACKSIPKRKLICQEDYDDVWREIQIMHHLSENPNVVRIHGTYEDLSSVHLVMELCEGGELFDRIVKKGHYSERQAASLIKTIVEVVQACHSLGVMHRDLKPENFLFDSVEEDAKLKATDFGLSVFYKPGETFSDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAESEIGIFRQILQGKLDFQSEPWPNISESAKDLIRKMLDQNPKKRLTAHEVLSHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIRDLMEAADIDNSGTIDYGEFIAATIHLNKLEREENLLSAFSYFDKDGSGYITVDEIQQACKEFGLGDVHIDEMIKEIDQDNDGQIDYAEFAAMMRMGNGGIGRRTMRNTLNLRDALGLIGTSSNNIMSG 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1788 524 SUPERFAMILY EF-hand 350 490 IPR011992 -
Alju13g1788 524 Gene3D Transferase(Phosphotransferase) domain 1 140 351 - -
Alju13g1788 524 SMART efh_1 464 492 IPR002048 GO:0005509
Alju13g1788 524 SMART efh_1 430 458 IPR002048 GO:0005509
Alju13g1788 524 SMART efh_1 358 386 IPR002048 GO:0005509
Alju13g1788 524 SMART efh_1 394 422 IPR002048 GO:0005509
Alju13g1788 524 CDD EFh 359 418 IPR002048 GO:0005509
Alju13g1788 524 ProSiteProfiles EF-hand calcium-binding domain profile. 464 495 IPR002048 GO:0005509
Alju13g1788 524 MobiDBLite consensus disorder prediction 1 28 - -
Alju13g1788 524 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Alju13g1788 524 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Alju13g1788 524 CDD STKc_CAMK 53 310 - -
Alju13g1788 524 ProSiteProfiles Protein kinase domain profile. 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1788 524 Gene3D - 424 523 - -
Alju13g1788 524 SUPERFAMILY Protein kinase-like (PK-like) 38 330 IPR011009 -
Alju13g1788 524 ProSiteProfiles EF-hand calcium-binding domain profile. 354 389 IPR002048 GO:0005509
Alju13g1788 524 Gene3D Phosphorylase Kinase; domain 1 55 139 - -
Alju13g1788 524 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Alju13g1788 524 FunFam calcium-dependent protein kinase SK5 348 420 - -
Alju13g1788 524 Gene3D - 352 423 - -
Alju13g1788 524 ProSitePatterns EF-hand calcium-binding domain. 367 379 IPR018247 -
Alju13g1788 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Alju13g1788 524 SMART serkin_6 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1788 524 CDD EFh 431 490 IPR002048 GO:0005509
Alju13g1788 524 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Alju13g1788 524 FunFam Calcium-dependent protein kinase SK5 139 323 - -
Alju13g1788 524 Pfam EF-hand domain pair 429 490 IPR002048 GO:0005509
Alju13g1788 524 Pfam EF-hand domain pair 359 419 IPR002048 GO:0005509
Alju13g1788 524 FunFam Calcium-dependent protein kinase 1 55 138 - -
Alju13g1788 524 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Alju13g1788 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 485 - -
Alju13g1788 524 Pfam Protein kinase domain 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1788 524 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Alju13g1788 524 FunFam Calcium-dependent protein kinase SK5 424 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1788 Alju-ChrAlju13 35691588 35695234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1788 41 520 EF-hand Containing Proteins AT1G35670 78.423 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Alju13g1788 Pkinase 1.3e-77 CL0016