Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1756 ATGGCAGCTTTTTCATTCCAATACCACCCTTTCGTTGTTGACTCTCCATTTTTCTCTAGTGCTCCCATTAAGATGACAGCTTTCACTGAGCAGCAACAGTCTCCCCAGTTTCACGAGTCATCTTTAGAAAATTGCTTTGTTGTTGTTGATCAAAGCTCCAAGTTTAACATGAGTGATAATGAGCCTTCTTCTGTGACTAAAAACCAGAGTCCTGAGACCTCTCTGGTATTGGATAAGCTTGAACCTGATGGTGAGCAGGTCACTCAGAAGGTGACTCCTATGGAGAAGAAGAAGAGAAACAGGATTAATCGTTCTTCTTCCTTGACTCGTCCTCAATCCAAGGAATCTACAGGAGCAAGAAACAAGAGACAAAAGAAGAGCAATAATGGTGAGTTGAAGGAAGGAGATAAGTCAAAAGATGAGAAGAAGAATCAGAAGAAGAGTCATGAAGAACCTCCAACAGGTTATATCCATGTAAGAGCAAGAAGGGGTCAGGCAACTGACAACCATAGCCTAGCTGAAAGGGCAAGAAGAGAGAAGATAAGTGAGAGGATGAAGATGTTGCAGCGACTTGTGCCAGGTTGTGACAAGGTGACTGGAAAAGCCCTCATGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTTTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTATATGACTTCACAATGGACCTTGACTCTCTCATGGTCAGACCAGAGAAATCAAATTGCATGCCATCACCACTTCCATCTGTGCAACAATGCAGCAGCCTCAACCAGGCCACAACTTTTGCAGATACAACCACCGGCTTTCCCACTGCTAATGACTATCCTTTGGACAATTCAGCTTCATTTTTCCTTCAAGGACAGAGGTCTAATGTCTTATCTGAGGACACAGCTAGTCAATTCTGGGACATAGAAGACCCACGCCAAAAGTTTCTTCATCCATATGGGATCAACAGCAACAGTTTATGATTTATCTTTTCCAGTAGGTACGGTAGCTCCAGACGGCCACGAAAATCAGTGAGAAAAAAAAAAAGTAGTAGTTCTTATGCTCGAAAAACCAGAGCCACGCTTGGAATCAGTAATTATCATCAGTTGAAGAAGAAATTAGAATTTGGTCGCCATAATATTATTATTATTGTTATTTCTGGCTTGGTTCCTAGTCCATCAGATTAA 1203 0.4148 MAAFSFQYHPFVVDSPFFSSAPIKMTAFTEQQQSPQFHESSLENCFVVVDQSSKFNMSDNEPSSVTKNQSPETSLVLDKLEPDGEQVTQKVTPMEKKKRNRINRSSSLTRPQSKESTGARNKRQKKSNNGELKEGDKSKDEKKNQKKSHEEPPTGYIHVRARRGQATDNHSLAERARREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMLYDFTMDLDSLMVRPEKSNCMPSPLPSVQQCSSLNQATTFADTTTGFPTANDYPLDNSASFFLQGQRSNVLSEDTASQFWDIEDPRQKFLHPYGINSNSLXFIFSSRYGSSRRPRKSVRKKKSSSSYARKTRATLGISNYHQLKKKLEFGRHNIIIIVISGLVPSPSD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1756 400 MobiDBLite consensus disorder prediction 56 170 - -
Alju13g1756 400 Gene3D - 162 235 IPR036638 GO:0046983
Alju13g1756 400 FunFam Basic helix-loop-helix transcription factor 162 235 - -
Alju13g1756 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 232 IPR036638 GO:0046983
Alju13g1756 400 MobiDBLite consensus disorder prediction 116 170 - -
Alju13g1756 400 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Alju13g1756 400 SMART finulus 171 221 IPR011598 GO:0046983
Alju13g1756 400 MobiDBLite consensus disorder prediction 56 75 - -
Alju13g1756 400 CDD bHLH_AtBPE_like 155 240 - -
Alju13g1756 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Alju13g1756 400 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 48 270 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1756 Alju-ChrAlju13 35476233 35478346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1756 1 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.689 6.05e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju13g1756 HLH 1.4e-06 No_clan