Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1748 ATGGGATCAACAGAGGTACCGATCAAGGGAAATCGCGTGGACGGGACGGGGGGATGCCACTCCTCTGTTTACAACAACCATGACGATGCTTGGAAACCTGCAGAGTGTCATAATGCTCACTCATCGTCAACTGTGAGAGACCCGGAAGCAGCGCTCTACTGGGAGCTATGGCACGCTTGTGCTGGTCCCCTCGTTACAGTGCCCCGTGAAGGGGAACGGGTCTTCTATTTTCCTCAAGGACATATTGAGCAAGTGGAGGCGTCCACAAATCAAGTGGCGGACCAGCATATGCCTGTGTACGATCTCCCATCGAAAATCCTTTGTCGAGTGATCAACGTGTTGTTGAAGGCTGAGCCGGACACCGACGAGGTGTTTGCCCAGGTGACCTTGCTTCCGGAGCCAAATCAAGATGTAAACGCCGTTGAGAAAGAGGCCCCGCCTCCTCCAACGCCACGGTTTCAGGTGCATTCGTTCTGTAAAACTCTGACGGCCTCTGATACAAGCACTCATGGTGGATTTTCAGTACTGAGACGTCATGCCGATGAATGCCTTCCTCCTCTGGATATGTCGAAGCAGCCACCTAACCAGGAGTTGGTGGCGAAGGATCTACTCGGTAACGAGTGGAGATTCAGGCATATCTTTAGAGGTCAACCACGCAGACATTTACTACAAAGTGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTTGTTGCTGGTGATGCATTTATATTTTTGAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTGAGACGTGCAATGAGACATCAGGGTAATGTTCCCTCCTCAGTGATCTCTTGTCACAGCATGCATCTTGGTGTCCTTGCAACTGCATGGCATGCGGTTTCGACTGGAACCATGTTCACTGTGTATTACAAGCCCAGAACCAGTCCTGCTGAATTTATTGTTCCTTACGAACAATATATGGAGTCCCTTAAAAATAATTATGCAATAGGAATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACTGTTATTGGACTTGAAGATGCTGATCCACAAAGGTGGCCAAAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAGCATTCCTCGTCCTGAGAGAGTTCCCCCTTGGAAAATAGAACCTGCTCATGCTCCTCCAGCTCTAAATCCTCTTACACTGACCAGGCCTAAAAGGCCTCGGCCTAATGCAATTCCATCATCACCTGATTCGTCTGTTCTCACTCGTGAAGTGTCATCTAAGGTAAGTATAGACCCTTTGCCAGCAAGTGGATTTCCAAGGGTATTGCGAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTGGCGGAAAGCTATGAATCTGATACCGCTGAAAAGCCTGATGAAAAAAATGATGCAGTGTCTACTTCAAGTACGTTTGCTCCGGAGAGCTGGACACCAACAGGGAGGCATGAGCCTTCATATTCAGACTTGCTCTCAGGCTTTGGGACAAATGGAGATCGAACCCATCTATCCTTGGTACATCAAACTAGCCCTATGGCTAGTCCTGGAAGGAAACATTTGTTAAGTCATGAAGGCAAGTTTAATGTGGTAGCCTGCCCAAGGCCTGTAATGCCTTCTAGTCTATCATTAAACTTCTTGGACCCTAACATGAAAGGTTCACAAGACAGTGATGTAACTTACCATGGTAGGCGGAATGTTGTGAGGTATGGCGCATTTGGTGATTACGCTGTGCTTCCTGCTCAGAAAGAAGAGCATAGGAGGCATGGAAGCCTGTTGATGCCACCACCTCCACCCCCAACTCAACATGATAGTCCTGGATCAAGAGACCCGATGCAAAAACCAACACAGGCAAGATCATGCGAGACTGTTAAAGCTAAAGAAGGGGACTGTAAGCTATTTGGCATCTCACTTATCAGTGGCCCAAGTACACCAGAGCCTTCCACATCAAAAATAAATACGGCATGTAAGCCAGCTGGTCACAGGCATCTTACATCACAACGGCCTGATACCAATGACTGTGATTTGAAATCAGAACAATCAAGCGGATCAAAGATGCCGGATGCTGTAGTTGCTACCGATGACCATGAAAAGCCATCACAAGCATTTCAGCCACATATGAAAGGTGTTCAAGCCATACAACGCAGTGATTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGGAGGTCAGTTGACCTGACAAAGTTCAGCAACTATGATGAATTAGTTGCTGAATTAGATGACTTGTTTGAATTTGGAGGGGAATTAAGGTCTTTGAAAAAGGATTGGCTAATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGGGATGATCCGTGGCAGGAGTTCTGTGCCATGTGA 2400 0.4738 MGSTEVPIKGNRVDGTGGCHSSVYNNHDDAWKPAECHNAHSSSTVRDPEAALYWELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVLLKAEPDTDEVFAQVTLLPEPNQDVNAVEKEAPPPPTPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPNQELVAKDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRHQGNVPSSVISCHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPYEQYMESLKNNYAIGMRFKMRFEGEEAPEQRFTGTVIGLEDADPQRWPKSKWRCLKVRWDETSSIPRPERVPPWKIEPAHAPPALNPLTLTRPKRPRPNAIPSSPDSSVLTREVSSKVSIDPLPASGFPRVLRGQEFSTLRGNLAESYESDTAEKPDEKNDAVSTSSTFAPESWTPTGRHEPSYSDLLSGFGTNGDRTHLSLVHQTSPMASPGRKHLLSHEGKFNVVACPRPVMPSSLSLNFLDPNMKGSQDSDVTYHGRRNVVRYGAFGDYAVLPAQKEEHRRHGSLLMPPPPPPTQHDSPGSRDPMQKPTQARSCETVKAKEGDCKLFGISLISGPSTPEPSTSKINTACKPAGHRHLTSQRPDTNDCDLKSEQSSGSKMPDAVVATDDHEKPSQAFQPHMKGVQAIQRSDSARSCTKVHKKGIALGRSVDLTKFSNYDELVAELDDLFEFGGELRSLKKDWLIVYTDNEGDMMLVGDDPWQEFCAM 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1748 799 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Alju13g1748 799 MobiDBLite consensus disorder prediction 612 626 - -
Alju13g1748 799 FunFam Auxin response factor 156 260 - -
Alju13g1748 799 Pfam AUX/IAA family 722 797 IPR033389 -
Alju13g1748 799 Gene3D - 321 392 - -
Alju13g1748 799 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 799 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju13g1748 799 SUPERFAMILY DNA-binding pseudobarrel domain 154 287 IPR015300 -
Alju13g1748 799 MobiDBLite consensus disorder prediction 457 491 - -
Alju13g1748 799 Gene3D - 721 799 - -
Alju13g1748 799 ProSiteProfiles PB1 domain profile. 726 799 IPR000270 GO:0005515
Alju13g1748 799 Gene3D - 155 260 IPR015300 -
Alju13g1748 799 MobiDBLite consensus disorder prediction 472 491 - -
Alju13g1748 799 SMART B3_2 158 260 IPR003340 GO:0003677
Alju13g1748 799 MobiDBLite consensus disorder prediction 662 693 - -
Alju13g1748 799 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju13g1748 799 SUPERFAMILY CAD & PB1 domains 728 797 - -
Alju13g1748 799 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Alju13g1748 799 MobiDBLite consensus disorder prediction 590 626 - -
Alju13g1748 799 CDD B3_DNA 156 258 IPR003340 GO:0003677
Alju13g1748 799 FunFam Auxin response factor 321 393 - -
Alju13g1748 799 MobiDBLite consensus disorder prediction 376 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1748 Alju-ChrAlju13 35414566 35418756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1748 1 799 B3 DNA Binding Superfamily AT5G62000 61.790 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju13g1748 AUX_IAA 1.3e-08 CL0072