Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1742 ATGAACCAGAGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATTCCTTTTTGCCTGAGAGGAGTGTTGGATTGCAGAAGCCAAAATCCTTTCATGATCATTATTTACAAGGAGCATCACAGCGAAGCATTTCAAATACATCGTCATCTCTAGAAATGAGTGCAAACTCTGGCTTGCCAATGTCACAAACAAGTCTGTCGGGAGAAGCTACAGGAAAGCTGCATGTTGCTGGAGGGGGCATCATTGATGTGTTGAAGTCTACCAAGGAATCAACGAATCATCACCCCAGATCATGGTCTAATGTGCACATGCAGCCAGAATCTGCATCTTATAGTTTAACTGGCAAAAAGATTCTCACTGATACTACTTCTCACGAGAGCAGCCTATTCTCTAGCTCACTGTCTGATATATTTAGTAAAAAATTGAGGTTAACTCAGAATGATATCCTGTCGCGCCAACCTGTAACCATTGGTTCATTTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATTGAGGCGGACACTATTGGGAATCTTCTTCCTGATGAAGATGATCTGTTTTCTGGTGTAACTAATGAGTTAGGATACACTGCTAATGCCAGAACCAATGATGACTTTGAGGAGTTTGATTTGTTTAGCAGTGGCGGAGGCATGGAACTTGAAGGCGATGAAAATCTAAGTATGGGAAAGAAAATTGGTAGTCTGGATGTAGATTCTGGTTATTTTGGAGGTTTTAAAGGAAAACTTCCTTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGTAATGTTGAAGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGAAATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAGAATAGGTCATTGAGGTCTAGAAAACTTGACATTCATTATTCAATTCCAAAGGGCAATGCTCCTGAGAGGGATATAAGCCATGGTACACTAGTGCTATCTGGTCTTGATTCATCTGTTTCAAATGATGAGCTTCAGCAGATTTTTGGATTTTATGGAGAAATAAAAGACATCAATGAATCTCCAGAATTAAATTATAAAAAAATCATTGAATTTTATGATGCACGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGGAGTGACATTGCTGGTAAGCAGATCAAGCTTGAACCTGGCTATCCTCGGGGAACAACATGTCTGACGCATGAGTCTCACAATGGCCAAGATGAACCTGATTTTGGTCAAGGTATCTGTGACAGCTTATCACTAAGACAGAAAGCAACGATGTCTTCTGGAGTAATTGCTTCTGGCTGCTTAGAAAATGGACCCAATCCAGGATTTCGCTCTGCAGTACCGCAACCTATTAATGCATTAATTGATAATGCTTTCTCTCCTGTGAATTCTAGCATCCATAAATCAGTGAGAGGGCCAACGTCAGGAAAAGTGCCCAGCCTCGATGCAATGAAATTTTCCCCTGTTCCAAGATTTCATCCTCATTCCCTCCCTGATTATCATGATAGCTTTGCTAGTGGTAGTGCTTACAACTTTTCTAGCATTGTTGGCAATGTGGCTGGCAACATTGGTACTGCAGTGACAGATTGCTCAGATAGCAGGCACAATCAGGGAATAGGTTCAACTGGGAATCTGATGGAATTTACTGGAGCAGGAAATGGTAACCATCAACGTCATGGGCTTTATCATATGTGGAACAACTCCAATTTGCATCAGGAACCTTCACCAAATCCCATGCTTTGGCAGAAAACATCATCATTTGTTAATGGTGCTTGTGCTCCCAGCCTTCCACAAATGCCCGGCTTTCCTAGAACACAGACTCACATGCTGAGAGCATCACATATGGATCATCATGTTGGGTCGGCTCCTGTTAATACTTCGCCCTGGGATAGGCAGCACGCTTATTTGGGAGTATCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTAGGAAGTGCTGGTTTACCTGGTAGCTGGCAAATGCATCCTCCGGAATTTACGTCTCACAATATGTTCCCTCATATTGGTGGGAATGGTGCAGAATTGACGCCAACTGCTGGGCAAAACTCTCCGAATCAGTTGTCACATGTTTTTCCTGGGAGACATCCCATGACTTCTATGTCCAAACTTGATCCCAATGAACGAATGAGGAATCTGTATCCCCTCCGGAAAAGTGAAGCTAACACTAATAATGCTGATAAAAAGCAATATGAACTTGACCTAGGCTGCATAATGCGTGGGGAAGACAGCCGAACAACTCTCATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGCCGGGGAACATATGATTTTCTATATTTGCCTATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTTATTAACATGATTGATCCTGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGTAAAGCTGCACTTATTGCTCACTTCCAGAATTCGAGCCTAATGAATGAAGACAAGCGTTGCCGACCTATTCTGTTCCACACAGATGGCCCAAATGCTGGTGATCCAGAGCCCTTCCCCATGGGTACTAACATTAGGATGAGGCCTGGGAAATCTCGTAGCAGCAGCAATAACGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGCAAGCGGAGAGGGATCTAATACTAATGGGACAGATTCTTCGTTGAGCTCTTCACGGAATTCTGACTGA 2871 0.4235 MNQRGISASSHLFDDNSFLPERSVGLQKPKSFHDHYLQGASQRSISNTSSSLEMSANSGLPMSQTSLSGEATGKLHVAGGGIIDVLKSTKESTNHHPRSWSNVHMQPESASYSLTGKKILTDTTSHESSLFSSSLSDIFSKKLRLTQNDILSRQPVTIGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTNELGYTANARTNDDFEEFDLFSSGGGMELEGDENLSMGKKIGSLDVDSGYFGGFKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGEIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPERDISHGTLVLSGLDSSVSNDELQQIFGFYGEIKDINESPELNYKKIIEFYDARAAEAALRALNRSDIAGKQIKLEPGYPRGTTCLTHESHNGQDEPDFGQGICDSLSLRQKATMSSGVIASGCLENGPNPGFRSAVPQPINALIDNAFSPVNSSIHKSVRGPTSGKVPSLDAMKFSPVPRFHPHSLPDYHDSFASGSAYNFSSIVGNVAGNIGTAVTDCSDSRHNQGIGSTGNLMEFTGAGNGNHQRHGLYHMWNNSNLHQEPSPNPMLWQKTSSFVNGACAPSLPQMPGFPRTQTHMLRASHMDHHVGSAPVNTSPWDRQHAYLGVSPETSGFRMGSLGSAGLPGSWQMHPPEFTSHNMFPHIGGNGAELTPTAGQNSPNQLSHVFPGRHPMTSMSKLDPNERMRNLYPLRKSEANTNNADKKQYELDLGCIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRMRPGKSRSSSNNEENRSQGSPSTLASGEGSNTNGTDSSLSSSRNSD 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1742 956 PANTHER RNA RECOGNITION MOTIF-CONTAINING 69 939 - -
Alju13g1742 956 FunFam MEI2-like protein 5 isoform 2 248 342 - -
Alju13g1742 956 CDD RRM1_MEI2_like 258 333 IPR034453 -
Alju13g1742 956 Gene3D - 342 434 IPR012677 -
Alju13g1742 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 411 IPR000504 GO:0003723
Alju13g1742 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 325 IPR000504 GO:0003723
Alju13g1742 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 417 IPR000504 GO:0003723
Alju13g1742 956 SMART rrm1_1 345 413 IPR000504 GO:0003723
Alju13g1742 956 SMART rrm1_1 260 328 IPR000504 GO:0003723
Alju13g1742 956 SMART rrm1_1 780 856 IPR000504 GO:0003723
Alju13g1742 956 CDD RRM3_MEI2_like 781 866 IPR034454 -
Alju13g1742 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 332 IPR000504 GO:0003723
Alju13g1742 956 FunFam Protein MEI2-like 1 343 437 - -
Alju13g1742 956 MobiDBLite consensus disorder prediction 43 62 - -
Alju13g1742 956 SUPERFAMILY RNA-binding domain, RBD 256 418 IPR035979 GO:0003676
Alju13g1742 956 SUPERFAMILY RNA-binding domain, RBD 780 865 IPR035979 GO:0003676
Alju13g1742 956 MobiDBLite consensus disorder prediction 912 956 - -
Alju13g1742 956 MobiDBLite consensus disorder prediction 889 956 - -
Alju13g1742 956 Gene3D - 253 341 IPR012677 -
Alju13g1742 956 Pfam RNA recognition motif 2 778 874 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1742 Alju-ChrAlju13 35336722 35342473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1742 254 410 Eukaryotic Initiation Factors Gene Family AT3G16380 25.281 8.31e-08 54.3