Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1712 ATGGATTGGAATTTGAAGGGTGGCTCCTGGGATTTTAGTGAATTAGATGGAGGAGGTTTACCCAACATAGAAACAAGGGTTGATCATTATAATATGGGGTCAACCAGATTTGGATTGATGAAGGGAAGTGGAGGCGAATTTTGTTTTGATTTGAAGCTAGGTCAGGTTGGCAATCCTGGGACTGAACCATCAGGGCCCAAGTGGAAAGCGGCCGCCGCCGGAGTGTCCAAAACGGCAACGACGTCAGGTGCTTCAGGATCATCGAAGAGAGCTCGAGCAATTAACAATGGGATCCAAACGGCGTCGTGCCTGGTGGATGGGTGCATTTCAGATCTGAGTAACTGTAGAGAGTACCATAGGCGTCACAAGGTGTGTGAACTTCATTCCAAGACTCCTGTGGTTACCATTGGAGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAAGAATTTGATGAAGGGAAGAGAAGTTGCAGGAAGCGATTAGATGGCCACAACCGACGGAGAAGGAAGCCCCAGCCAGTTCCTCTCACTCGTTCTGCTACTTTATTCTCCAATTGCCACCAAGGGAGGCAGTTACTACCCTTCTCATCAGACTCAAATCTATATCCTTCAAGTGCTATGGTGAACCCTGGTTGTGACTGGGAATGGGATGGTAGGACGATGGTTCATCATGATAATAATCATAACAAGCAGCAACTATTTTTTGGGTCTTCTGAAAGCTCCAAAATTAAGCAGGAAATGACAACATATCTTGAGAAGCCATGTATTGAAGCTCTGAGGACGGCGACAGCGACGGCGAGGTCTGGCTCTTTCTCATCATCTCCTCCTCCACCTTGTGCTCTCTCTCTTCTGTCATCGCCGCCGCCGGCACCTATGTACCTGTCATCGCAACCTCTAGCCGCCGCCGCCCTCGATGATCATCACGGCCTACAAGAGGCTGTGGACACTACACTTCTGGATAGCAATGGGAGTCATCAGCCTTCAATGTATAACTTGTTAGGGTCTGATGCATCCCATACTAATAATTCTCAGTCACTTCCATTTCATTGGGAATAA 1074 0.4814 MDWNLKGGSWDFSELDGGGLPNIETRVDHYNMGSTRFGLMKGSGGEFCFDLKLGQVGNPGTEPSGPKWKAAAAGVSKTATTSGASGSSKRARAINNGIQTASCLVDGCISDLSNCREYHRRHKVCELHSKTPVVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPVPLTRSATLFSNCHQGRQLLPFSSDSNLYPSSAMVNPGCDWEWDGRTMVHHDNNHNKQQLFFGSSESSKIKQEMTTYLEKPCIEALRTATATARSGSFSSSPPPPCALSLLSSPPPAPMYLSSQPLAAAALDDHHGLQEAVDTTLLDSNGSHQPSMYNLLGSDASHTNNSQSLPFHWE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1712 357 FunFam Squamosa promoter-binding-like protein 14 94 164 - -
Alju13g1712 357 Pfam SBP domain 103 176 IPR004333 GO:0003677
Alju13g1712 357 Gene3D - 94 164 IPR036893 GO:0003677|GO:0005634
Alju13g1712 357 ProSiteProfiles Zinc finger SBP-type profile. 100 177 IPR004333 GO:0003677
Alju13g1712 357 MobiDBLite consensus disorder prediction 335 357 - -
Alju13g1712 357 SUPERFAMILY SBT domain 102 179 IPR036893 GO:0003677|GO:0005634
Alju13g1712 357 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 336 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1712 Alju-ChrAlju13 35077432 35079034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1712 1 357 SBP-box Gene Family AT5G50670 40.155 2.27e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju13g1712 SBP 2.2e-30 No_clan