Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1651 ATGGATCCCTCTGAATCCGATTCAACAGCTGTTTCGAACCCTATCAAAGACCCAGAATTGGGCATTCACTCAGCTTCTTCTCTCCCCAGTGCCAATCATGATCCTGAACCGTCAGATCTCAATTCCAGGCATGAGACTGATCCCCTTCATGAAGACTTTCAGAACAAGTTGATTTTGAAGGATAAGGATGAGACGGCCGAAGAGGAAAAGGAGAAGAAAGATTCAGAATTAGATGATGCTAAAGAAGTAAGTGCTATAGCTGATACCGGAGACTCTGAGAAGGAACAAGTTTTTGATGAAGCTAACCAGAATTGGAACGGAAATGAGGACGATGGTTGGGGAGAGAATGTGAACGAGAGTGAGAATGATAATTTTGGTATAGATGATGTAACTGTCGGTGGTGAAGTGGAGAAGAACGATGAGGAAAGTAGCGGTATAGCACACCAGTACCCAGTGAGGCCAGAAGCTGAAGATTGTGCGTTCTATCTCAAGACTGGAACCTGCAAGTTTGGGTTCAACTGCAAATTTAATCATCCTCTTAAGAGGAAAATCCAGGTTGTTAAGGAGAAAGGGAGAGACAGAGAAGAATTTGGAGAAAGATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAAGGCTTGTAAATTTAACCACACCAGAGGAAAATGTTTAGCAACCACAATTTTGGAACTTAACTTTCTTGGCCTGCCGATTCGTCTGGGAGAGAGAGAGTGCCCATATTATATGCGTACCGGCTCTTGTAAGTTTGGCGCAAACTGCAGATTCAATCATCCTGATCCTACCATTGTTGGAGGAAGTGATCCTCCTTCAACATATGCTAATGGTGGGGCTGTTCCTTTACAAGGCGTATCGCAGCCATCTATACCCTCTTGGTCTTCTCCAAGAACATTAAATGAAACTGCTTTTGTGCCAATGATGATTCCACCTATTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCCGTCTACCTACCTGAGAGGACTGTGCACCCACCACCATCTACATACGTTGTGAACAATCCAGCTATTGAGACAAATGTCTATATGCCCCATCCAAAGCCGATGCAGGTTGATGAGTTTCCAGAGAGGCCTGGTGAACCAGAGTGCAGTTACTACCTAAAAACTGGGCATTGCAAATTTAGATATAATTGTAAATTTCACCATCCAAAGAACCGTATTGCAAGACCACCATGCGCCCTAAGTGACAAGGGTCTGCCTTTGAGACCTGATCAGGGTGTCTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCATCATGTAAGTTTGACCACCCAACAGACCTAACGCCGTCAAGTATGCCAGGACTTGATCAGGAATCCTCCTACACAAACTCTGCTAGTGTTGAAGTGGCTGAGATGGCTGGAAGTGGGAGTGCAGGTGACTCCCCCAATTAA 1479 0.4476 MDPSESDSTAVSNPIKDPELGIHSASSLPSANHDPEPSDLNSRHETDPLHEDFQNKLILKDKDETAEEEKEKKDSELDDAKEVSAIADTGDSEKEQVFDEANQNWNGNEDDGWGENVNESENDNFGIDDVTVGGEVEKNDEESSGIAHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKIQVVKEKGRDREEFGERSGQTECKYYLKSGGCKYGKACKFNHTRGKCLATTILELNFLGLPIRLGERECPYYMRTGSCKFGANCRFNHPDPTIVGGSDPPSTYANGGAVPLQGVSQPSIPSWSSPRTLNETAFVPMMIPPIQGVSPQSSDWNGYQAPVYLPERTVHPPPSTYVVNNPAIETNVYMPHPKPMQVDEFPERPGEPECSYYLKTGHCKFRYNCKFHHPKNRIARPPCALSDKGLPLRPDQGVCSHYSRYGICKYGPSCKFDHPTDLTPSSMPGLDQESSYTNSASVEVAEMAGSGSAGDSPN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1651 492 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Alju13g1651 492 ProSiteProfiles Zinc finger C3H1-type profile. 427 455 IPR000571 GO:0046872
Alju13g1651 492 ProSiteProfiles Zinc finger C3H1-type profile. 200 228 IPR000571 GO:0046872
Alju13g1651 492 MobiDBLite consensus disorder prediction 1 96 - -
Alju13g1651 492 Gene3D - 348 419 - -
Alju13g1651 492 Gene3D - 197 278 - -
Alju13g1651 492 Gene3D - 427 476 - -
Alju13g1651 492 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Alju13g1651 492 SUPERFAMILY CCCH zinc finger 204 228 IPR036855 GO:0046872
Alju13g1651 492 ProSiteProfiles Zinc finger C3H1-type profile. 382 410 IPR000571 GO:0046872
Alju13g1651 492 SUPERFAMILY CCCH zinc finger 247 274 IPR036855 GO:0046872
Alju13g1651 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 225 IPR000571 GO:0046872
Alju13g1651 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 272 IPR000571 GO:0046872
Alju13g1651 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 384 409 IPR000571 GO:0046872
Alju13g1651 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 453 IPR000571 GO:0046872
Alju13g1651 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Alju13g1651 492 SUPERFAMILY CCCH zinc finger 152 181 IPR036855 GO:0046872
Alju13g1651 492 SUPERFAMILY CCCH zinc finger 425 453 IPR036855 GO:0046872
Alju13g1651 492 Gene3D - 118 190 - -
Alju13g1651 492 Coils Coil 63 83 - -
Alju13g1651 492 SMART c3hfinal6 429 454 IPR000571 GO:0046872
Alju13g1651 492 SMART c3hfinal6 200 227 IPR000571 GO:0046872
Alju13g1651 492 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Alju13g1651 492 SMART c3hfinal6 382 409 IPR000571 GO:0046872
Alju13g1651 492 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Alju13g1651 492 PANTHER PROTEIN PHOSPHATASE RELATED 31 467 - -
Alju13g1651 492 SUPERFAMILY CCCH zinc finger 387 411 IPR036855 GO:0046872
Alju13g1651 492 MobiDBLite consensus disorder prediction 37 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1651 Alju-ChrAlju13 34650403 34654037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1651 378 479 C2H2 Transcription Factor Family AT3G02830 43.689 8.41e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju13g1651 zf-CCCH 1.5e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1651 13 34650403 34654037 Alju13g1651 13 34650403 34654037 ECH