Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1648 ATGATAGGTTGTAGGTGTAATAATGAAAAGTGCTATGCATGCATGAAACTTAGGCTCTCTAAGCAAAAAAGAGCAAGAGCCAAAAAAACAATGACCACCTCTTTCCTATCTCTGCTCTTCTTTCTCTCCTTTTTTCTCTTCATAACCCTCATTTCCTCCAGACCCCTCCATGACCCAGAATTGGTAGTACAAGAAGTGAACAGGAAGATCAATGCTTCAATGGCGGGCAGGAGGAACTTGGGGTACCTATCCTGTGGTACAGGCAACCCCATTGACGATTGCTGGAGATGTGACGCTGACTGGGAGAAGAACCGGCAGAAGCTAGCCGATTGTGCAATTGGGTTCGGGAAGAATGCTGTTGGGGGAAAGGACGGTGACATTTACGTGGTGACGGACTCCGGCGACGACGACCCGGTGAACCCGAAGCCGGGGACTCTCCGGTACGCGGTGATCCAAGACGAGCCGTTGTGGATCACATTTGCAAGAGACATGGTGATCCAGCTGAAAGAAGAGCTTATAATGAACTCGTTCAAGACCATCGACGGTAGAGGAGCGAGCGTACATATTGCGGGGGGTCCATGCATTACGATCCAGTACGTGACCAACATTATAATCCACGGCATTAACATCCATGACTGTAAGCAAGGTGGGAACGCTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGGACGGTATCGGACGGTGACGGCGTGTCCATTTTCGGAGGGAGCCACGTGTGGGTCGACCATTGCTCCTTGTCAAACTGCAACGACGGTCTGGTCGATGCGATTCATGGGTCCACCGCAATCACCATCTCCAACAATTATATGACCCACCATGACAAGGTCATGTTATTAGGTCACAGTGATTCCTATACAGAAGACAAGAACATGCAAGTAACTATAGCCTTTAATCACTTCGGAGAAGGGCTCGTTCAGAGAATGCCAAGATGTAGGCATGGATATTTCCATGTTGTGAACAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAAGGAAACAGATTTGTAGCACCCGATGACAGATTCAGCAAGGAGGTGACGAAGCATGAAGATGCGGCGGAGAGCGAGTGGCAGGGGTGGAATTGGAGGTCGGAAGGGGACTTGATGGTAAACGGTGCGTTTTTCACGGCGTCAGGGGCCGGAGCCTCGTCCAGCTATGCCAGAGCTTCAAGTCTAAGTGCGAGGCCTTCTTCACTTGTGGGAACCATAACCGGAGGCGCTGGTGCACTTACCTGCCGGAAAGGTTCTAGTTGCTAA 1314 0.5068 MIGCRCNNEKCYACMKLRLSKQKRARAKKTMTTSFLSLLFFLSFFLFITLISSRPLHDPELVVQEVNRKINASMAGRRNLGYLSCGTGNPIDDCWRCDADWEKNRQKLADCAIGFGKNAVGGKDGDIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWITFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAAESEWQGWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGTITGGAGALTCRKGSSC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1648 437 SMART amb_all 163 360 IPR002022 -
Alju13g1648 437 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Alju13g1648 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Alju13g1648 437 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Alju13g1648 437 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Alju13g1648 437 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Alju13g1648 437 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Alju13g1648 437 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Alju13g1648 437 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Alju13g1648 437 Pfam Pectate lyase 172 354 IPR002022 -
Alju13g1648 437 PANTHER PECTATE LYASE 18-RELATED 56 435 IPR045032 GO:0030570
Alju13g1648 437 SUPERFAMILY Pectin lyase-like 78 432 IPR011050 -
Alju13g1648 437 Gene3D - 88 430 IPR012334 -
Alju13g1648 437 FunFam Pectate lyase 88 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1648 Alju-ChrAlju13 34631591 34635129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1648 19 437 Polysaccharide Lyase AT5G63180 79.147 0.0 682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1648 13 34631591 34635129 Alju13g1648 13 34631591 34635129 ECH
Alju06g1860 06 40462965 40464470 Alju13g1648 13 34631591 34635129 ECH