Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1635 ATGAAAATTCAAAACTCCCAAGAGCCCATACTTTTTCGTATCAACTATCTGCCACGTTTGCTCCTTCCCCTCCTCTTCGACCTCTCTCTGCCACCGTCAGCAAAACCCTGCACCCCTCTATACCCCTTATCCGCTCAAGCTTCTCCTCCTCCTCCTTCTGGACAGACTTCTCTGGCAATGGCAGAAACATGCCTGCTTTCTTTGCCCTCACTATTGCGCAACAAAACCAAACATCCCCATTTCTCATCAATTCCTTCTAAACCCCTCAACCTTCAGCTCTCATGCTCCAACTCTTCACTCATCAAGAGAACTCACTCTTCCTCTATATTGACATTTGTTGCACAGACATCGGATTGGGCTCAGCAAGAAGCTGACAACACAGTTGCTGTTGGAGACGATGAACCCGCCTGGGAAAATCAAGAGGTCGACAATACCGAAGCTGGCCTTTCAGACGGGGAGGCTGAGGGTGGTGAAGACGGGATTTTAGAGGAAGGGGGATACGAAGAACCGCCTGAAGATGCCAAAATCTATGTCGGTAACTTGCCTTACGATGTTGATAGCGAAAAATTGGCTATGCTTTTTGAGCAAGCTGGAACTGTTGAAATTGCCGAGTTGATTTATAACAGGGAGACTGACCAAAGTCGTGGGTTCGGATTTGTAACGATGAGCACAGTTGAAGAAGCCGAGAAAGCTGTAGAAAAATTCAGCCGCTACGATTTAGATGGAAGAATACTGATTGTTAATAAGGCTGCTCCAAGAGGATCAAGGCCTGAACGTCCACCTCGTGCCTTCGAACCTGCTTTCAGAATCCACGTTGGCAACCTGCCGTGGGATGTTGATAATGGTCGCCTGGAGCAAATCTTTAGCGAACAGGGCACGGTCGTGAATGCTCGGATAGTTTATGACAGAGAGACTGGCCGATCACGGGGTTTTGGATTCGTCGCAATGGCCAGTGAGACAGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGAGTGTGAATGGGAGAGCGATCAGAGTGAGTGCTGCTGAGGAAAGGCCCAGGCGTGGCTCCTTTTGA 1062 0.4859 MKIQNSQEPILFRINYLPRLLLPLLFDLSLPPSAKPCTPLYPLSAQASPPPPSGQTSLAMAETCLLSLPSLLRNKTKHPHFSSIPSKPLNLQLSCSNSSLIKRTHSSSILTFVAQTSDWAQQEADNTVAVGDDEPAWENQEVDNTEAGLSDGEAEGGEDGILEEGGYEEPPEDAKIYVGNLPYDVDSEKLAMLFEQAGTVEIAELIYNRETDQSRGFGFVTMSTVEEAEKAVEKFSRYDLDGRILIVNKAAPRGSRPERPPRAFEPAFRIHVGNLPWDVDNGRLEQIFSEQGTVVNARIVYDRETGRSRGFGFVAMASETEMNDAIAALDGQSVNGRAIRVSAAEERPRRGSF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1635 353 CDD RRM2_NsCP33_like 269 344 - -
Alju13g1635 353 MobiDBLite consensus disorder prediction 152 167 - -
Alju13g1635 353 Gene3D - 258 353 IPR012677 -
Alju13g1635 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
Alju13g1635 353 FunFam 31 kDa ribonucleoprotein, chloroplastic 114 257 - -
Alju13g1635 353 PANTHER OS02G0815200 PROTEIN 82 348 - -
Alju13g1635 353 FunFam 31 kDa ribonucleoprotein, chloroplastic 258 352 - -
Alju13g1635 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 252 IPR000504 GO:0003723
Alju13g1635 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 243 IPR000504 GO:0003723
Alju13g1635 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 340 IPR000504 GO:0003723
Alju13g1635 353 Gene3D - 114 257 IPR012677 -
Alju13g1635 353 SUPERFAMILY RNA-binding domain, RBD 260 351 IPR035979 GO:0003676
Alju13g1635 353 MobiDBLite consensus disorder prediction 132 171 - -
Alju13g1635 353 SUPERFAMILY RNA-binding domain, RBD 169 262 IPR035979 GO:0003676
Alju13g1635 353 SMART rrm1_1 175 248 IPR000504 GO:0003723
Alju13g1635 353 SMART rrm1_1 269 342 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1635 Alju-ChrAlju13 34547943 34549825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1635 172 350 Eukaryotic Initiation Factors Gene Family AT3G16380 33.511 6.90e-22 94.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2462 06 51619331 51622328 Alju13g1635 13 34547943 34549825 CCT
Alju06g2462 06 51619331 51622328 Alju13g1635 13 34547943 34549825 ECH
Alju13g1635 13 34547943 34549825 Alju13g1635 13 34547943 34549825 ECH