Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1624 ATGCTGCAGAATTCGTCCCTACAAGACTTTGATAACTTTGACTCTGAATTTGTAGAGATTAATCCCACCGGTCGATATGTTCGGTACAAGGAAGTTTTAGGGAAGGGAGCTTTCAAGAAGGTATATCGAGCTTTCGATGAGTTGGAAGGAATTGAAGTTGCATGGAATCAGATTGAAGTGGATGAACGAATGTGTAATTCTGAAGATTTGGAACGCCTGTATTCGGAAGTTCATCTGCTGAAGACTTTAAAGCATAAAAATATAATCACATTTTATAATTCATGGGTCGATCCAGAGCATGGCAACATCAACTTCATTACTGAAATATTTACTTCAGGAACATTACGCCAATACAGGAAGAAACACAAGTGTGTCAACTTGAAAGCCTTAAAGAAATGGTCTAGGCAGATTTTGGAGGGGCTTTCCTATCTTCACAGTCATGATCCACCAATTATTCATCGAGATCTTAAGTGCGACAACATCTTTGTCAATGGAAATCAAGGTGAGGTGAAAATTGGTGACTTGGGACTCGCAGCCATTCTTCAGCAAGCCAATTCAGCTCATAGTGTCATAGGTACTCCAGAGTTTATGGCCCCAGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATTTATGCTTTTGGCATGTGCTTGCTAGAATTGGTAACTTTTGAGTACCCATATGTTGAATGTGCAAATGCTGCTCAAATATACAAGAAAGTGACATCTCTTTTCGTTAAGGATAAGCGATTCAGATTTCTTAAAGCATTCATATCTGGCTTGGGAGTAAAGCCAGCATCTTTGGCAAAAGTGACAGATCCTGGGGTTGAAGCATTTATAGCAAAGTGTATTGCCAATGTATCTGAACGATTATCTGCTAAGGATCTCTTAATGGATTCCTTCCTTCATTTAGACGAAGATACTGATGATACAGGTCGTTTCTTAAGGCCTAAAATTCATCATCCAGATACAAGTAGGGAATTTACAGTGGAAGGTCAACGGAGAGATGTTAATACAATATTTCTGAAACTGAGATTAGTAGACTTCTCAGGTCATATTTGCAATATCCACTTTCCTTTCAATATTGAGGCAGACACTGCAGTTGGGGTTGCCGGGGAAATGGTTGAGGAGCTTGAGCTATCTGAGCAAGATGTCACAACTATTGCTAAGATGATTGAGTCAGAAATTCAAAACCACTTCCCAGTTTGGAATCCCATCCATAGCTCAGGCAAAGGGAAGGCAGTTTCAAGCAGATTTGCCTCTACCGCTTTTACTGGTACTCTTGCATTGGAAAGACTACCTTCAGGTCGTAAATTCCGGTCTGATTCACCCAAGCAAGTAGCCAAAAACCCTTTTTTAAGGCCCGGAACTTCTAACTTGTCTACCTGTAAAGTGGAAGTGGGCACTGAGGAAAGTAACTTGACTGCAAATGATGTTGCCTCAGTTCATCAGCAGGATAAGAACTGTGTTTATGATGGTGAGAGAAGGATTACATATAATGATCCAAAAGTAACAGAAGGAGGATCTCCTCCGGAAGCAGAATCTAGCATATTAGGATATTCTGAATCAGAAAATGTCAACTTAATTGCCACAAAACTAAGAAAGTTGTTGGTGACACAACAAGAGGACTTGAAGAAACTAAGGAAGAAACATGAATTAGCTGTCTCAGATTTTCTGAAAAAGCTTCCTTATGAAGTGCGGCAGCTGGTTTTAAATAAGAGGCGATGTGAGGTCCTCTTTTATTCGGCCGCAGATAACAAAATCCTCAAATCATCATCCGTTTCCTCCTATCTTCTTCGCTTCTTCTCTAACCACTCTCTTTACCATTCTCCAATGGCGATTTCTTCTGCAACTGCTTCTGCTTCCTCCAAGCTCATATTCCTTCATCCCTCTCCTTCTCCTTCCTCTTCTTCCTCCTCGTCTCTCTCTCTAAACCCTCACAAACTCACATCCCCCACAGCCCATCTCTCATCTTCCTTCATTAACCCCTCTACAATCCTCCGCCTCTCCCCCTCCTCCGCCTCCTCCGCCACCACGCGCCATCGCTCCTTCACTATCCGAGCTGCTCGCGGCAAGTTCGAGAGGAAGAAACCCCATGTTAACATCGGCACCATTGGCCATGTCGACCACGGCAAGACCACTCTCACTGCTGCTCTCACCATGGCCCTAGCGGCTTTGGGAAACAGTGCCCCAAAGAAATACGATGAAATTGACGCTGCCCCCGAAGAACGAGCTCGTGGAATTACCATTAATACTGCCACTGTCGAGTATGAGACTGAGAATCGCCATTACGCCCACGTCGACTGTCCCGGCCACGCCGATTATGTCAAGAACATGATTACCGGTGCTGCTCAGATGGACGGCGCTATTCTTGTTGTTTCCGGCGCCGACGGTCCAATGCCGCAGACTAAGGAGCATATACTTTTGGCTAAGCAAGTGGGTGTCCCAAATATGGTCGTGTTTCTAAACAAGCAAGACCAGGTTGATGATGAAGAGCTTCTGCAACTTGTGGAATTAGAGGTTCGTGAGCTTCTTTCTTCTTATGAATTCCCTGGTGATGATGTTCCCATTATTTCTGGTTCTGCTCTATTAGCTTTGGAGGCATTGATGGCAAATCCTGCCATTAAACGAGGAGAAAACCAATGGGTAGACAAAATTTACGAACTTATGGATTCTGTGGATAGCTACATCCCAATTCCTCAGCGTCAAACTGATCTTCCTTTCTTGCTGGCAATTGAAGACGTGTTTTCAATCACTGGCCGTGGGACTGTGGCCACAGGACGTGTTGAGAGAGGTACAATTAAGGTCGGTGACACGGTAGATATTGTTGGTGTAAGAGAAACCAGAAACACAACTGTGACTGGGGTAGAAATGTTCCAGAAAATTCTTGATGAGGCCATGGCTGGGGATAATGTGGGATTGCTGTTGAGAGGTATCCAGAAGATTGATATTCAGAGAGGCATGGTTTTGGCTAAGCCAGGCACCATTACTCCACACACCAAGTTCGAAGCAATTGTGTATGTGCTGAAGAAGGAAGAAGGAGGAAGGCACTCACCATTCTTTGCTGGTTACAGGCCACAGTTCTACATGAGGACTACTGATGTGACTGGGAAAGTGACTGCCATAATGAATGATAAGGATGAAGAATCAAAGATGGTTATGCCAGGAGATCGAGTTAAGATGGTGGTTGAACTTATAGTGCCAGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAGACTGTTGGGGCTGGTGTCATTCAATCGATCATTGAGTGA 3294 0.4372 MLQNSSLQDFDNFDSEFVEINPTGRYVRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIEVDERMCNSEDLERLYSEVHLLKTLKHKNIITFYNSWVDPEHGNINFITEIFTSGTLRQYRKKHKCVNLKALKKWSRQILEGLSYLHSHDPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSLFVKDKRFRFLKAFISGLGVKPASLAKVTDPGVEAFIAKCIANVSERLSAKDLLMDSFLHLDEDTDDTGRFLRPKIHHPDTSREFTVEGQRRDVNTIFLKLRLVDFSGHICNIHFPFNIEADTAVGVAGEMVEELELSEQDVTTIAKMIESEIQNHFPVWNPIHSSGKGKAVSSRFASTAFTGTLALERLPSGRKFRSDSPKQVAKNPFLRPGTSNLSTCKVEVGTEESNLTANDVASVHQQDKNCVYDGERRITYNDPKVTEGGSPPEAESSILGYSESENVNLIATKLRKLLVTQQEDLKKLRKKHELAVSDFLKKLPYEVRQLVLNKRRCEVLFYSAADNKILKSSSVSSYLLRFFSNHSLYHSPMAISSATASASSKLIFLHPSPSPSSSSSSSLSLNPHKLTSPTAHLSSSFINPSTILRLSPSSASSATTRHRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPAIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1624 1097 CDD STKc_WNK 25 303 - -
Alju13g1624 1097 CDD EFTU_III 998 1092 - -
Alju13g1624 1097 SMART serkin_6 27 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1624 1097 Gene3D Translation factors 904 1032 - -
Alju13g1624 1097 CDD EFTU_II 909 995 IPR033720 -
Alju13g1624 1097 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 516 - -
Alju13g1624 1097 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 356 397 IPR024678 GO:0004674|GO:0005524
Alju13g1624 1097 SUPERFAMILY Protein kinase-like (PK-like) 29 649 IPR011009 -
Alju13g1624 1097 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Alju13g1624 1097 NCBIfam small GTP-binding protein domain 701 833 IPR005225 GO:0005525
Alju13g1624 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Alju13g1624 1097 Pfam Elongation factor Tu C-terminal domain 996 1095 IPR004160 -
Alju13g1624 1097 FunFam probable serine/threonine-protein kinase WNK9 110 308 - -
Alju13g1624 1097 CDD EF_Tu 699 901 IPR041709 -
Alju13g1624 1097 FunFam Elongation factor Tu 689 901 - -
Alju13g1624 1097 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 996 1096 IPR009001 -
Alju13g1624 1097 Pfam Protein kinase domain 29 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1624 1097 ProSiteProfiles Protein kinase domain profile. 27 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1624 1097 Pfam Elongation factor Tu domain 2 923 991 IPR004161 GO:0005525
Alju13g1624 1097 Gene3D Transferase(Phosphotransferase) domain 1 110 308 - -
Alju13g1624 1097 PRINTS GTP-binding elongation factor signature 766 776 IPR000795 GO:0003924|GO:0005525
Alju13g1624 1097 PRINTS GTP-binding elongation factor signature 819 828 IPR000795 GO:0003924|GO:0005525
Alju13g1624 1097 PRINTS GTP-binding elongation factor signature 746 754 IPR000795 GO:0003924|GO:0005525
Alju13g1624 1097 PRINTS GTP-binding elongation factor signature 782 793 IPR000795 GO:0003924|GO:0005525
Alju13g1624 1097 PRINTS GTP-binding elongation factor signature 702 715 IPR000795 GO:0003924|GO:0005525
Alju13g1624 1097 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 698 902 IPR000795 GO:0003924|GO:0005525
Alju13g1624 1097 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Alju13g1624 1097 Gene3D - 690 901 IPR027417 -
Alju13g1624 1097 Gene3D Translation factors 1036 1096 - -
Alju13g1624 1097 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 739 754 IPR031157 -
Alju13g1624 1097 FunFam Elongation factor Tu 904 1032 - -
Alju13g1624 1097 Coils Coil 531 551 - -
Alju13g1624 1097 Gene3D - 339 406 - -
Alju13g1624 1097 SUPERFAMILY Translation proteins 903 999 IPR009000 -
Alju13g1624 1097 NCBIfam elongation factor Tu 690 1097 IPR004541 GO:0003746|GO:0005525|GO:0006414
Alju13g1624 1097 Hamap Elongation factor Tu [tuf]. 689 1097 IPR004541 GO:0003746|GO:0005525|GO:0006414
Alju13g1624 1097 Pfam Elongation factor Tu GTP binding domain 698 899 IPR000795 GO:0003924|GO:0005525
Alju13g1624 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 924 IPR027417 -
Alju13g1624 1097 FunFam Elongation factor Tu 1036 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1624 Alju-ChrAlju13 34474612 34480243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1624 103 471 MAP Kinase Kinase Kinase AT3G48260 61.619 2.92e-147 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Alju13g1624 Pkinase 1.7e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1624 13 34474612 34480243 Alju13g1624 13 34474612 34480243 ECH