Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1621 ATGTATATGGTATTCGACTTGGCTCGCATAATGCTTATGTATGTAAAAGTCATTACGTCTTCGCCTCTTGCGTTGTACATGCTCTCTCTGTGGCCTTCTCCCACTTCCCCCCCTCCGGTTCCAGAAACAACTACGGGCAAAATGAGTTCTTCCATGGAGGTTACCCTGCAAAATCCCCCAGTTGACGAAATATTGGAGCAAAATGGTGTCGCCGCCCAAGACCCAGCTCCTTCTCCCATGCTTTCTGAAGAGAAGGTTATCGTCTCTGTCGAAGTATGTTTGAAACCTTCGAGTACAGCTCGGATCGCAGATGTCCGTTCAGCCGTCGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATATTGATGGACCCATTCCTCTGCCTCTTGATGACACGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGCGATACTGATGAGTCGACGAGCAGTCATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCATGTGAGGAAATAAGTAACGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCATTTGGGAAAGCTTAATATATGAGTCTGGTCTCAAGCAAAGATTGTTAAGATATGCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAACCGCATTGTTCTCTTACATGGGCCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCACAAAAACTATCCATTCGATTCAATCAAAGATACCCCCAGTGTCAGCTGATTGAAGTTAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCGAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCATCAGACTCTATTCGGGTCGTCAATGCATTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACATCCAACATAACTGCTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATACTAAAGTCGTGCTTGGAGGAATTGATGCGCACAGGGATCTTGACTGGTTTACAGGATTGTATGAACATCAAGCTTCCAAATTATGCTAATGCTAAGGAAAAGTTGAACACACCTGAGAATCATGAAGCCGCTCAACTGTGTAAACAATTACTTGAAACTGCAGAGGCATGCGAGGGAATGAGCGGAAGATCTTTGAGGAAGCTCCCATTCTTGGCACACGCTGCCTTTGCCAATCCTTCAGATTGCAACCCATTTAAGTTCTTATGTACAATGATAGAAACAGCGAAGAGGGAGCGCTCTGAGCTTCCCGACTGA 1503 0.4345 MYMVFDLARIMLMYVKVITSSPLALYMLSLWPSPTSPPPVPETTTGKMSSSMEVTLQNPPVDEILEQNGVAAQDPAPSPMLSEEKVIVSVEVCLKPSSTARIADVRSAVERMLENRCLSYIDGPIPLPLDDTFLSENVQRICICDTDESTSSHNILLFWQVKPDVHVFQLSEEGPCEEISNDGQPSSFNEWILPAKEFDGIWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILKSCLEELMRTGILTGLQDCMNIKLPNYANAKEKLNTPENHEAAQLCKQLLETAEACEGMSGRSLRKLPFLAHAAFANPSDCNPFKFLCTMIETAKRERSELPD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1621 500 Pfam ATPase family associated with various cellular activities (AAA) 241 386 IPR003959 GO:0005524|GO:0016887
Alju13g1621 500 ProSitePatterns AAA-protein family signature. 359 378 IPR003960 GO:0005524|GO:0016887
Alju13g1621 500 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 241 259 IPR001270 GO:0005524
Alju13g1621 500 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 355 369 IPR001270 GO:0005524
Alju13g1621 500 Gene3D - 184 404 IPR027417 -
Alju13g1621 500 FunFam pachytene checkpoint protein 2 homolog 181 403 - -
Alju13g1621 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 468 IPR027417 -
Alju13g1621 500 CDD RecA-like_Pch2-like 187 385 - -
Alju13g1621 500 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 68 497 IPR044539 -
Alju13g1621 500 SMART AAA_5 237 389 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1621 Alju-ChrAlju13 34455109 34461760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1621 241 407 Calmodulin-binding Proteins AT3G56690 29.586 4.66e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1621 13 34455109 34461760 Alju13g1621 13 34455109 34461760 ECH