Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1616 ATGCTGATATCTGGAATCGTGGAAGGCAGTGATTTGCTTGAGTTGGGATTATGTGAGGTGCCATGTTTTGATCCAACACGTAACCTTGCAGGATTACATACTATCATAATTGATTTGGATGCAGTCAATCGCGGCGCGAAAGCTCATACAGAGGAGGCGGAAATGACGACCAGATTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGTGCTGGCCATGGCCGTATCGGCAAGCACCGGAAGCACCCGGGAGGTCGAGGTAACGCCGGAGGTATGCACCATCACCGTATCCTCTTCGACAAGTACCATCCTGGTTACTTCGGTAAGGTTGGTATGCGTTACTTTCACAAGCTTCGCAACAAGTTTTATTGCCCCATTGTCAACATAGACAAGCTCTGGTCCTTGATTCCTCAAGAGGTGAAAGACAAAGCTTCCAAGGATAGCGCCCCCGTGATCGATGTCACTCAACATGGCTATTTTAAGGTTTTGGGTAAAGGAGTTTTGCCTGAGAACCAGCCTGTGGTTGTGAAGGCCAAGCTTGTGTCCAAGATTGCCGAGAAGAAGATCAAGGAGGCTGGCGGAGCTGTTGTCCTTACTGCTTAA 603 0.4859 MLISGIVEGSDLLELGLCEVPCFDPTRNLAGLHTIIIDLDAVNRGAKAHTEEAEMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDSAPVIDVTQHGYFKVLGKGVLPENQPVVVKAKLVSKIAEKKIKEAGGAVVLTA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1616 200 Gene3D - 112 200 - -
Alju13g1616 200 ProSitePatterns Ribosomal protein L15 signature. 161 193 IPR001196 GO:0003735|GO:0005840|GO:0006412
Alju13g1616 200 SUPERFAMILY Ribosomal proteins L15p and L18e 60 199 IPR036227 -
Alju13g1616 200 FunFam 60S ribosomal protein L27a 112 200 - -
Alju13g1616 200 MobiDBLite consensus disorder prediction 60 88 - -
Alju13g1616 200 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 82 197 IPR021131 -
Alju13g1616 200 MobiDBLite consensus disorder prediction 58 88 - -
Alju13g1616 200 PANTHER 60S RIBOSOMAL PROTEIN L27A 55 200 - -
Alju13g1616 200 Hamap 50S ribosomal protein L15 [rplO]. 55 199 IPR030878 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1616 Alju-ChrAlju13 34433626 34435292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1616 55 200 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 88.356 1.20e-95 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2512 06 52059966 52064243 Alju13g1616 13 34433626 34435292 CCT
Alju06g2512 06 52059966 52064243 Alju13g1616 13 34433626 34435292 ECH
Alju13g1616 13 34433626 34435292 Alju13g1616 13 34433626 34435292 ECH