Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1611 ATGGCATCATCATCAAGCTCTTACTCATCTCCATGCGCTGCCTGCAAATTCCTGAGAAGAAAATGCATGCCAGGTTGCATCTTCGCGCCTTATTTCCCACCAGAGGAGCCTCAAAAATTCGCGCACGTGCACAAAATCTTCGGAGCCAGCAACGTGACCAAGCTCCTCAACGAGCTCCTTCCTCACCAGAGAGAAGACGCCGTCAACTCTCTCGCCTACGAAGCAGAGGCGCGTGTCAGAGACCCCGTTTACGGCTGTGTCGGCGCCATCTCCTTCCTTCAAAGACAGGTTCAGAGGCTTCAGAAGGAGCTCGACGCCGCTAACGCCGATCTCCTCCGTTATGCCTGCAACGAGCTCCCTCCGCCGCCCGCTAATTCTCTCTCCATGGTCCCACCACCTGGTTTTGGAATCACACCTTCATCACTCCAAATCCAACAATTCCCTCAGAGGCCAAGGTCGACCACCATGGAATATATTAATGGCGGTGGCGGTGGCGGGTTGTACAGGCAATTTCCGGCTGGTTATAGTTACTCTCTTCCTTATACTATTCCATGGGCTGATACAGCTTCTGATAACATCGACGAGGGAGCAGCTGCAGCAGGAGGAGGTGGTGGTGGAGGAGGTAATTTGTAA 633 0.534 MASSSSSYSSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFAHVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYACNELPPPPANSLSMVPPPGFGITPSSLQIQQFPQRPRSTTMEYINGGGGGGLYRQFPAGYSYSLPYTIPWADTASDNIDEGAAAAGGGGGGGGNL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1611 210 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Alju13g1611 210 Coils Coil 90 117 - -
Alju13g1611 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 133 - -
Alju13g1611 210 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1611 Alju-ChrAlju13 34375222 34375854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1611 1 187 AS2 family AT5G63090 64.894 8.87e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Alju13g1611 LOB 9.4e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2518 06 52153515 52154024 Alju13g1611 13 34375222 34375854 CCT
Alju06g2518 06 52153515 52154024 Alju13g1611 13 34375222 34375854 ECH
Alju13g1611 13 34375222 34375854 Alju13g1611 13 34375222 34375854 ECH