Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1605 ATGGAGTTGCAAATGTTGTCATGCGCCACTGCCTTATCCTCCTCCCTCCCCAACCTCCGTAGGCTCCCGCGTGACTCCCCCAATGCTTCCTTTCTCTCCGTCAAGCCGATCGGGGCTGTTGCCGATGGCGTCAATCTTATCTGGGGAAGGCATCCGTCCCGCACTCTGCTTGCCGACACATGTTTTGGTTCCTTACCGTTGCTCCTCCCTAGGCTCAAACCTTTCTCCCCTGTTCTGCGTGTCATTGGAGTTCGTAGCATTGTTGTAATGCCTGTAAATCCATGGACCCTCTTCTTCCTCTGCTTTTCTCTTTCACTTCTTCGTCATTCTTTTATAGCTTTTGCATTAAACTCGCAAGGCGAAGCTCTTCTTTCATGGAAGAGAACCCTCAAGGGATCACTGGAGGTGTTGAGTAATTGGAATCCAAATGACAATACACCATGCGGCTGGTTTGGAGTTAACTGTAACTCCAACAACGAGGTTGTGAAATTAGATCTGAGGTATGTGGATTTGGTTGGGACACTTCCTTCTAATTTCACCTCATTGAGTCTTTCCCTGAACGAGCTAGTCCTAACTGGAACCAACCTCACTGGTTCAATTCCGAAAGAAATAGGCACTCTTGGCCTGCTCCACTACTTGGACTTGAGTGACAATGCCCTGACAGGTGAAATCCCAAGTGAGCTTTTCTTCTTGACAAAGCTTGAGCAACTCCATCTGAACTCAAACCAGCTTGCAGGTTCGATTTCGAAGGCAATAGGGAATCTCACAGAGTTGACGTCGTTGGTTTTATATGACAATCAACTTGGTGGTGAAATTCCCAGAACCATTGGCAACTTGAGGAAGCTGCAAGTGATCAGAGCTGGAGGAAACAAGAACGTTCAAGGCTTCTTGCCACAAGAAATTGGCAACTGTACCAATTTAATCGTGTTGGGTTTGGCTGAAACTAGTATTTCTGGTTCTCTTCCTCCAACTATTGGCCGTCTTAAGAAGCTTGACACTCTTGCAATTTACACTTCACTTCTCTCTGGCCAAATTCCTCCCGAACTAGGGGATTGCGATGAGCTTCAGAACATTTATCTGTACGAGAATTCCCTCTCAGGATCCATACCAAGTAGACTGGGAAATCTTAAAAACCTCAAAAATCTTCTACTATGGCAAAACAATCTAGTTGGCACCATCCCACCAGAGCTTGGAAATTGCCACCAGTTATCCGTCATTGACATTTCGATGAACTCACTCGTCGGAAGCATTCCCAAAAGTTTTGGAAATTTGACGTTGCTGGAGGAGCTTCAACTCAGTGTCAATCAGATTTCGGGTCAGATTCCAACAGAATTGGGAAACTGTCACTTACTCAGTCACATTGAGCTGGACAACAATCTAATCACGGGTACAATACCTTCTGAATTTGGGAACCTTGGGAATCTAACTTTGCTGTTCCTGTGGCATAACAAGCTCGAAGGAACTATACCATCTTCGCTTTCGAGTTGTCCAAATCTGGAAGCAGTGGATCTGTCACAGAATGGATTGACGGGTTCCATTCCGAAGGGGATATTCCTGCTCAAGAATCTGAACAAGCTTTTGCTACTCTCTAACAATCTCTCTGGGGATATACCCCCTGAGATTGGGAACTGTACGTCTCTGATTCGGTTCCGAGCCAGCAACAATAAAATCACGGGGAACATTCCACCAAATATTGGAAATCTGAAGAATTTGAATTTCTTGGATCTTGCAAGCAATCGCGTTTCAGGAGTTATTCCAGAAGAGCTCTCAGGCAGTCCAAATCTGGCATTTCTGGACCTCCATTCAAACTTGATATCAGGAAGCTTGCCAGAAAGTCTCAGCCAGCTAATCTCGCTCCAATTTATTGATGTCTCCGATAACATGATTGAAGGTAAACTAAGCCCAAGCCTCGGAAAGCTTGGCGTACTCACCAAACTCATTCTGAGAAAAAATCATATCTCTGGGTCTATTCCGAGTGAATTTGGTTTTTGTGCGAAGCTGCAACTATTGGACCTCAGTAGCAATAAACTTTCAGGCAAAATCCCAGGTAGTCTGGGTAACATTCCGGCGCTGGAAATCGCAATGAACTTAAGCTGGAATCAGCTCTATGGCGAGATTCCTATGGAGTTTTCTGCATTGAGCAAACTTGGAGTTTTGGACATATCGCACAACGAGCTCATCGGTAACCTGCAGTATCTCGAGGACCTCCAAAATCTCGTGGTCCTCAACATCTCATACAACAATCTCTCGGGTCGCGTGCCAGACAAGCCTTTCTTCTCGAAGCTTCCTCTCAGCGTCCTCGAGGGGAACCCATCGCTCTGCTTCCCCGGCAACCGATGTCCCGGAGGCATTTCCAAACGATCAATTCGGCGGACAAAGGCAGCGCGTATAGCCATGGTGGTCCTCTTGTGTATCGCGTGTTTGCTTTTCTTCACGGCCCTGTACGTCGTCGTTGCAGCAAAAAGACGGTGGTTTCCGGAGGACGATCTGGACCTCAACAGTAGGGATAGCGACGTGGAGATGGGCCCACCTTGGGAGGTTACACTTTATCAGAAGCTAGACTTGTCAATCTATGACGTGGCGAGATGCCTCACAGTTGGCAACGTAATTGGGCGCGGACGATCAGGCGTAGTTTACAGAGTAGATCTCCCCTCGGGATTAACGATTGCAGTGAAAAGGTACAGATTATCGGAGAAATTCTCAGCCTCTGCATTCTCCTCGGAGATTGCGACGCTAGCGAGAATCCGGCACCGGAATATTGTACGGCTATTAGGTTGGGCGGCGAATCGGAAAACGAAACTACTGTTGTATGATTATTTACCTAACGGTAATCTAGATACGCTCTTGCACGAGGGTTGCAGAGGATTCATTGAGTGGGAGACACGGTTCAAGATAGCATTGGGCGTGGCGGAAGGCTTGGCTTATCTACACCATGACTGCGTGCCAGCTATCTTGCACCGGGACGTCAAGGCGCACAACATTTTGTTAGGACACACACACGAACCATGTTTGGCAGATTTTGGATTTGCAAGATTGGTGGACGACGATCACAGCCCGTTTTCCGTTAATCCACAATTCGCGGGTTCTTACGGTTACATTGCGCCAGAATATGGGTGCATGGTGAGGATAAGAGAGAAGAGCGACGTGTACAGCTTCGGAGTAGTACTGTTAGAGATAATAACGGGGAAAAGACCCATAATAGAGGCAGGCATTGCGGAGGAGGGGGAGGGAGAGCACGTGATAGGGTGGGTGAGACAGAAGCTGAAGAGCAAGAGGGACCCAATAGAGATTGTGGATTCTAAGCTTCAGGGACTTCCAGACACACACATCCAAGAGATGCTTCAGGCTCTTGGCATTGCTCTTCTTTGCACCAGTCATCGTCCCGATGATCGCCCCACCATGAAGGATGTCGCCGCGTTATTGAGGGAGATTCGATCCGACCCTTCCCTTTCCTCTGATCTGCCCCACAACTACAAGCCACCCGCCCCCACCACTACTGCTGTTCATGGCCTTTCCCCGAAAACGACGCCTCATCCTTCGTCGTTTTCCTCATCCTCCGCCTTGTCCCTCCTCCAGTCTTCTTCTCATAATTCTCTTGCCCTTTACCACTTACCACCCACCTAG 3624 0.4793 MELQMLSCATALSSSLPNLRRLPRDSPNASFLSVKPIGAVADGVNLIWGRHPSRTLLADTCFGSLPLLLPRLKPFSPVLRVIGVRSIVVMPVNPWTLFFLCFSLSLLRHSFIAFALNSQGEALLSWKRTLKGSLEVLSNWNPNDNTPCGWFGVNCNSNNEVVKLDLRYVDLVGTLPSNFTSLSLSLNELVLTGTNLTGSIPKEIGTLGLLHYLDLSDNALTGEIPSELFFLTKLEQLHLNSNQLAGSISKAIGNLTELTSLVLYDNQLGGEIPRTIGNLRKLQVIRAGGNKNVQGFLPQEIGNCTNLIVLGLAETSISGSLPPTIGRLKKLDTLAIYTSLLSGQIPPELGDCDELQNIYLYENSLSGSIPSRLGNLKNLKNLLLWQNNLVGTIPPELGNCHQLSVIDISMNSLVGSIPKSFGNLTLLEELQLSVNQISGQIPTELGNCHLLSHIELDNNLITGTIPSEFGNLGNLTLLFLWHNKLEGTIPSSLSSCPNLEAVDLSQNGLTGSIPKGIFLLKNLNKLLLLSNNLSGDIPPEIGNCTSLIRFRASNNKITGNIPPNIGNLKNLNFLDLASNRVSGVIPEELSGSPNLAFLDLHSNLISGSLPESLSQLISLQFIDVSDNMIEGKLSPSLGKLGVLTKLILRKNHISGSIPSEFGFCAKLQLLDLSSNKLSGKIPGSLGNIPALEIAMNLSWNQLYGEIPMEFSALSKLGVLDISHNELIGNLQYLEDLQNLVVLNISYNNLSGRVPDKPFFSKLPLSVLEGNPSLCFPGNRCPGGISKRSIRRTKAARIAMVVLLCIACLLFFTALYVVVAAKRRWFPEDDLDLNSRDSDVEMGPPWEVTLYQKLDLSIYDVARCLTVGNVIGRGRSGVVYRVDLPSGLTIAVKRYRLSEKFSASAFSSEIATLARIRHRNIVRLLGWAANRKTKLLLYDYLPNGNLDTLLHEGCRGFIEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGHTHEPCLADFGFARLVDDDHSPFSVNPQFAGSYGYIAPEYGCMVRIREKSDVYSFGVVLLEIITGKRPIIEAGIAEEGEGEHVIGWVRQKLKSKRDPIEIVDSKLQGLPDTHIQEMLQALGIALLCTSHRPDDRPTMKDVAALLREIRSDPSLSSDLPHNYKPPAPTTTAVHGLSPKTTPHPSSFSSSSALSLLQSSSHNSLALYHLPPT 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1605 1207 SMART serkin_6 864 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1605 1207 PRINTS Leucine-rich repeat signature 667 680 - -
Alju13g1605 1207 PRINTS Leucine-rich repeat signature 713 726 - -
Alju13g1605 1207 Pfam Leucine rich repeat N-terminal domain 117 156 IPR013210 -
Alju13g1605 1207 SUPERFAMILY Protein kinase-like (PK-like) 850 1141 IPR011009 -
Alju13g1605 1207 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 498 783 - -
Alju13g1605 1207 Gene3D Phosphorylase Kinase; domain 1 856 939 - -
Alju13g1605 1207 ProSitePatterns Protein kinases ATP-binding region signature. 870 892 IPR017441 GO:0005524
Alju13g1605 1207 ProSiteProfiles Protein kinase domain profile. 864 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju13g1605 1207 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 940 1157 - -
Alju13g1605 1207 Gene3D Ribonuclease Inhibitor 372 452 IPR032675 -
Alju13g1605 1207 SUPERFAMILY RNI-like 163 486 - -
Alju13g1605 1207 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 553 1142 - -
Alju13g1605 1207 FunFam Nuclear pore complex protein NUP107 116 272 - -
Alju13g1605 1207 SUPERFAMILY RNI-like 416 755 - -
Alju13g1605 1207 MobiDBLite consensus disorder prediction 1168 1185 - -
Alju13g1605 1207 Gene3D Ribonuclease Inhibitor 116 271 IPR032675 -
Alju13g1605 1207 Gene3D Ribonuclease Inhibitor 272 371 IPR032675 -
Alju13g1605 1207 SMART LRR_sd22_2 568 591 - -
Alju13g1605 1207 SMART LRR_sd22_2 713 738 - -
Alju13g1605 1207 SMART LRR_sd22_2 231 257 - -
Alju13g1605 1207 SMART LRR_sd22_2 472 495 - -
Alju13g1605 1207 Gene3D Transferase(Phosphotransferase) domain 1 940 1154 - -
Alju13g1605 1207 Pfam Leucine rich repeat 643 702 IPR001611 GO:0005515
Alju13g1605 1207 Pfam Leucine rich repeat 570 629 IPR001611 GO:0005515
Alju13g1605 1207 Pfam Leucine rich repeat 451 509 IPR001611 GO:0005515
Alju13g1605 1207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 984 996 IPR008271 GO:0004672|GO:0006468
Alju13g1605 1207 SMART LRR_typ_2 736 769 IPR003591 -
Alju13g1605 1207 SMART LRR_typ_2 640 664 IPR003591 -
Alju13g1605 1207 SMART LRR_typ_2 207 231 IPR003591 -
Alju13g1605 1207 SMART LRR_typ_2 376 400 IPR003591 -
Alju13g1605 1207 SMART LRR_typ_2 255 279 IPR003591 -
Alju13g1605 1207 SMART LRR_typ_2 568 591 IPR003591 -
Alju13g1605 1207 SMART LRR_typ_2 472 496 IPR003591 -
Alju13g1605 1207 SMART LRR_typ_2 520 544 IPR003591 -
Alju13g1605 1207 SMART LRR_typ_2 424 448 IPR003591 -
Alju13g1605 1207 FunFam Leucine-rich repeat receptor protein kinase EMS1 393 492 - -
Alju13g1605 1207 FunFam Predicted protein 273 371 - -
Alju13g1605 1207 Gene3D Ribonuclease Inhibitor 453 693 IPR032675 -
Alju13g1605 1207 Gene3D Ribonuclease Inhibitor 694 781 IPR032675 -
Alju13g1605 1207 MobiDBLite consensus disorder prediction 1148 1185 - -
Alju13g1605 1207 Pfam Protein kinase domain 866 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1605 Alju-ChrAlju13 34303879 34311143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1605 113 1145 Receptor kinase-like Gene Family AT5G56040 54.467 0.0 1072
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Alju13g1605 Pkinase 1e-39 CL0016