Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1567 ATGGAAGGTAGACATGAATATAAGAAGGGGCTCTGGAATTCTCAGGAAGACGAGATCTTAATGGACTACGTTAAGCAGCATGGTGTAGGCAAGTGGAACCGTATCGCTAAATTCACAGAATTGAAGAGATGTGGCAAAAGTTGCAGACTCAGGTGGATGAACTACCTGAGTCCGAATGTGAAGCGTGGAGATTTCTCAGAAGAAGAAGACGACCTCATTATTCGCCTCCACAATCTCCTTGGAAATAGGTGGTCACTGATAGCAGGGAGGGTGCCAGGGAGGACTGACAACCAAGTGAAGAACTATTGGAACACTCATTTGAGCAAAAAGTTGGGTGTTAATAAGAAGGGAAAGACCAAAGTGTGTCAACCTTTGAAGCCACCCTCTACTGAATCAAACGACCTCGTTTCCAACAAGGTTGAGTCAAATCCTGTGAAGGGAGCTTCAAACTGTAGGGAAGAGGGTGAGATTGGGAAGTTGCTCGCAGATAAGGAGGATTTCAAAAGCATGGAGGAGATCATTATGAGTGACAATGATTTTGAGTCCAACTTTTTGTTTGCTAACAATAATGGAATTGACCTTTATGATCCTTCCTCCTTCACATCAGAGCCTTTCCAAGACTACTTTGTTGACCTTGATTGGGCTGCCTTGTAA 654 0.4388 MEGRHEYKKGLWNSQEDEILMDYVKQHGVGKWNRIAKFTELKRCGKSCRLRWMNYLSPNVKRGDFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNYWNTHLSKKLGVNKKGKTKVCQPLKPPSTESNDLVSNKVESNPVKGASNCREEGEIGKLLADKEDFKSMEEIIMSDNDFESNFLFANNNGIDLYDPSSFTSEPFQDYFVDLDWAAL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1567 217 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Alju13g1567 217 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Alju13g1567 217 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Alju13g1567 217 FunFam MYB-related transcription factor 8 61 - -
Alju13g1567 217 FunFam Transcription factor WER 63 134 - -
Alju13g1567 217 SMART sant 8 58 IPR001005 -
Alju13g1567 217 SMART sant 61 109 IPR001005 -
Alju13g1567 217 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 143 - -
Alju13g1567 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Alju13g1567 217 CDD SANT 12 56 IPR001005 -
Alju13g1567 217 Gene3D - 63 135 - -
Alju13g1567 217 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Alju13g1567 217 CDD SANT 65 107 IPR001005 -
Alju13g1567 217 Gene3D - 9 61 - -
Alju13g1567 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Alju13g1567 217 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1567 Alju-ChrAlju13 33920112 33921282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1567 5 129 MYB Transcription Factor Family AT5G40330 74.016 5.77e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju13g1567 Myb_DNA-binding 2.8e-14 CL0123