Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1562 ATGGCTATCAGAGGCGTCGATTTTAAGTGGTACGATGGGTTTTTCTTGTCGATGCTCGCTACTAGTGTAGTTATTGTCGCGATTAATTGGAAGCGGTATCATACCTGTACACACCCTTTACACATATGGATTGTGGTCGACTACTCTACTGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCGGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGAAGAGTAGTGGTCCTTTCAATCCTTGCTTTGCTTCTATATCCATTTCTTTGGGCTTGGACTATCATTGGTACCCTCTGGTTCACTAGTGCAAGGAACTGCTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGGACTGCTTTGCGTTGCTTGCATGTCATTAGGCAAGTGGTTGACCCGAAGACAAGCACATTTATTGCGTGCCCAGCAGGGTATTCCTGTGTCTGAATATGGAGTTCTAGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACTAGAGGTATGGGCCAAGATGCTGGGGCATATCATCCTGGACTTTATCTAACCCCAGCTCAGAGAGAAGCAGTAGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCTACTGACTGTAGTGAATGCCCTATCTGCTTAGAAGAATTCCACGAGGGAAACGAGGTCCGTGGCTTGCCTTGCGCTCATAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTTCGTCCTGAATCAGAACGATCTTCTGCCAGTGTTGTGACAACAACAAGATATGTGAGAGGTCAACCTTCAAGTCAGAGTTATTTGTTGAGATTACAGGGTCTTCTCCGCCCAGTGCGTTCAGAAATTGCTGGGCCAGTTGATGAGGTGGGTAATACTTTGGAAAATGCAGAGAACGGTAGTGTGCCTGAAGAGGTACGAAATGGATCAATTAGAGACCAAGGCCCTTCAGTGGAATGCATGCCTGTTAGTCTCTCCTCTGCTCAAAATTAG 1143 0.4593 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHTCTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFTSARNCLPEEGQKWGFLIWLLFSYCGLLCVACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRSEIAGPVDEVGNTLENAENGSVPEEVRNGSIRDQGPSVECMPVSLSSAQN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1562 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842|GO:0010182
Alju13g1562 380 SUPERFAMILY RING/U-box 217 284 - -
Alju13g1562 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Alju13g1562 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Alju13g1562 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Alju13g1562 380 SMART ring_2 235 275 IPR001841 -
Alju13g1562 380 MobiDBLite consensus disorder prediction 341 380 - -
Alju13g1562 380 Pfam Ring finger domain 234 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1562 Alju-ChrAlju13 33858415 33861963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1562 58 353 C3H Transcription Factor Family AT3G47990 74.582 2.18e-160 450
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1562 13 33858415 33861963 Alju13g1562 13 33858415 33861963 ECH